C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: slingshot homolog 1 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042121 Ssh1 10090 - 5:113937094-113993894 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000077689 Ssh1-003 113942192-113989743 protein_coding
  ENSMUST00000112298 Ssh1-002 113939765-113993779 protein_coding
  ENSMUST00000159510 Ssh1-004 113961393-113993827 nonsense_mediated_decay
  ENSMUST00000159592 Ssh1-001 113937094-113993894 protein_coding
  ENSMUST00000162322 Ssh1-006 113966604-113993767 retained_intron
  ENSMUST00000162396 Ssh1-005 113965602-113966756 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077689ENSMUST00000112298ENSMUST00000159592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077689 N/A N/A N/A N/A 2.715±0.00 1.224±0.00 N/A N/A 1.331±0.14 N/A 0.432±0.06 N/A 4.660±0.22 N/A
ENSMUST00000112298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.978±0.00 N/A
ENSMUST00000159592 7.589±2.49 2.369±1.92 3.751±0.83 2.644±1.47 6.445±1.30 3.468±1.62 2.530±0.62 4.101±0.51 1.273±0.41 9.233±2.53 0.738±0.06 5.313±3.97 3.108±0.84 1.560±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GO CIL_0001GO_0003 CGP 5:113842436-113993894
CIL_0001VP CIL_0001VP_0002 CGP 5:113937094-114025449

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0003677 IEA DNA binding
GO:0003779 IBA actin binding
GO:0004721 ISO phosphoprotein phosphatase activity
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IBA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0006470 IBA protein dephosphorylation
GO:0008064 IBA regulation of actin polymerization or depolymerization
GO:0008138 IBA protein tyrosine/serine/threonine phosphatase activity
GO:0010591 IBA regulation of lamellipodium assembly
GO:0030036 IEA actin cytoskeleton organization
GO:0032268 ISO regulation of cellular protein metabolic process
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050770 IBA regulation of axonogenesis
GO:0071318 ISO cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010031 ssh1b slingshot homolog 1b (Drosophila) protein_coding Danio_rerio
ENSDARG00000056780 ssh1a slingshot homolog 1a (Drosophila) protein_coding Danio_rerio
ENSG00000084112 SSH1 slingshot protein phosphatase 1 protein_coding Homo_sapiens

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