C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: slingshot protein phosphatase 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000084112 SSH1 9606 - 12:108778192-108857590 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000326470 SSH1-003 108791926-108827551 protein_coding
  ENST00000326495 SSH1-001 108778192-108857590 protein_coding
  ENST00000546433 SSH1-004 108784797-108807690 nonsense_mediated_decay
  ENST00000546697 SSH1-007 108809719-108826286 protein_coding
  ENST00000546812 SSH1-006 108811258-108826394 processed_transcript
  ENST00000547381 SSH1-008 108807793-108811634 retained_intron
  ENST00000547862 SSH1-010 108807612-108817380 retained_intron
  ENST00000548522 SSH1-005 108807675-108857513 nonsense_mediated_decay
  ENST00000551165 SSH1-002 108791919-108857590 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000326495ENST00000546433ENST00000551165
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000326495 1.378±0.00 0.571±0.00 N/A 0.386±0.00 1.025±0.00 2.239±0.00 1.262±0.00 1.356±0.00 0.411±0.00 N/A 3.428±0.00 N/A 1.001±0.00 0.635±0.00
ENST00000546433 2.856±0.00 1.490±0.00 1.061±0.00 1.382±0.35 1.585±0.22 1.763±0.18 1.271±0.71 1.028±0.03 2.349±0.00 0.948±0.00 2.733±0.10 1.979±1.26 1.547±0.50 2.425±0.50
ENST00000551165 N/A N/A N/A 1.232±0.00 N/A N/A 0.677±0.00 1.153±0.00 2.219±0.00 2.032±0.00 3.277±0.00 2.333±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GO CIL_0001GO_0002 CGP 12:108645109-108857590
CIL_0001VP CIL_0001VP_0001 CGP 12:108778192-108901043

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000902 IMP cell morphogenesis
GO:0003677 IEA DNA binding
GO:0003779 IDA actin binding
GO:0004721 IDA phosphoprotein phosphatase activity
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IDA plasma membrane
GO:0006470 IMP:IEA protein dephosphorylation
GO:0008064 IBA regulation of actin polymerization or depolymerization
GO:0008138 IBA:IEA protein tyrosine/serine/threonine phosphatase activity
GO:0010591 IBA regulation of lamellipodium assembly
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0030036 IMP actin cytoskeleton organization
GO:0032268 IDA regulation of cellular protein metabolic process
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0042995 IEA cell projection
GO:0050770 IBA regulation of axonogenesis
GO:0071318 IDA cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010031 ssh1b slingshot homolog 1b (Drosophila) protein_coding Danio_rerio
ENSDARG00000056780 ssh1a slingshot homolog 1a (Drosophila) protein_coding Danio_rerio
ENSMUSG00000042121 Ssh1 slingshot homolog 1 (Drosophila) protein_coding Mus_musculus

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