C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: slingshot homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000159592 Ssh1-001 ENSMUSG00000042121 10090 - 5:113937094-113993894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000159592
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000159592 7.589±2.49 2.369±1.92 3.751±0.83 2.644±1.47 6.445±1.30 3.468±1.62 2.530±0.62 4.101±0.51 1.273±0.41 9.233±2.53 0.738±0.06 5.313±3.97 3.108±0.84 1.560±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001GO CIL_0001GO_0003 CGP 5:113842436-113993894
CIL_0001VP CIL_0001VP_0002 CGP 5:113937094-114025449

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000902 IEA cell morphogenesis
GO:0003677 IEA DNA binding
GO:0003779 IBA actin binding
GO:0004721 ISO phosphoprotein phosphatase activity
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 IBA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0006470 IBA protein dephosphorylation
GO:0008064 IBA regulation of actin polymerization or depolymerization
GO:0008138 IBA protein tyrosine/serine/threonine phosphatase activity
GO:0010591 IBA regulation of lamellipodium assembly
GO:0030036 IEA actin cytoskeleton organization
GO:0032268 ISO regulation of cellular protein metabolic process
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050770 IBA regulation of axonogenesis
GO:0071318 ISO cellular response to ATP

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269033 SSH2-001 protein_coding Homo_sapiens 0 255
ENST00000326470 SSH1-003 protein_coding Homo_sapiens 0 1600
ENST00000326495 SSH1-001 protein_coding Homo_sapiens 0 2302
ENST00000540801 SSH2-003 protein_coding Homo_sapiens 0 255
ENST00000546433 SSH1-004 nonsense_mediated_decay Homo_sapiens 0 403
ENST00000546697 SSH1-007 protein_coding Homo_sapiens 0 484
ENST00000546812 SSH1-006 processed_transcript Homo_sapiens 0 206
ENST00000547381 SSH1-008 retained_intron Homo_sapiens 0 213
ENST00000547862 SSH1-010 retained_intron Homo_sapiens 0 383
ENST00000548522 SSH1-005 nonsense_mediated_decay Homo_sapiens 0 606
ENST00000551165 SSH1-002 protein_coding Homo_sapiens 0 1748
ENST00000609203 CLCN3P1-002 processed_transcript Homo_sapiens 0.00004 55

Loading