C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: SET domain containing 1A
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042308 Setd1a 10090 + 7:127776670-127800122 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000047075 Setd1a-001 127776670-127800122 protein_coding
  ENSMUST00000047157 Setd1a-201 127777389-127800115 protein_coding
  ENSMUST00000126761 Setd1a-004 127777389-127783701 protein_coding
  ENSMUST00000141439 Setd1a-005 127778577-127781903 processed_transcript
  ENSMUST00000143951 Setd1a-003 127777695-127778565 protein_coding
  ENSMUST00000144406 Setd1a-002 127777149-127784074 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047075ENSMUST00000047157
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047075 2.082±0.03 2.689±0.41 N/A 1.451±0.44 3.179±0.72 1.593±0.19 N/A 1.404±0.10 N/A N/A 1.418±0.23 2.578±0.44 3.479±0.00 1.632±0.71
ENSMUST00000047157 3.657±0.21 3.192±0.77 3.361±1.41 4.839±2.00 3.623±0.34 3.612±0.78 2.858±0.87 3.209±0.44 5.485±0.65 4.864±0.81 4.174±0.70 5.944±5.43 9.486±8.00 5.088±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000553 CIL_000553_0002 CGP 7:127769815-127800122
CIL_00044U CIL_00044U_0003 CGP 7:127776670-127803802

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 ISO nucleus
GO:0019827 IMP stem cell maintenance
GO:0035097 ISO histone methyltransferase complex
GO:0042800 IEA histone methyltransferase activity (H3-K4 specific)
GO:0048188 IEA Set1C/COMPASS complex
GO:0051568 IMP histone H3-K4 methylation
GO:2000179 IMP positive regulation of neural precursor cell proliferation
GO:2000648 IMP positive regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000060030 setd1a SET domain containing 1A protein_coding Danio_rerio
ENSG00000099381 SETD1A SET domain containing 1A protein_coding Homo_sapiens

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