C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET domain containing 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047075 Setd1a-001 ENSMUSG00000042308 10090 + 7:127776670-127800122 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyMuscleOvaryPlacentaTestisENSMUST00000047075
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENSMUST00000047075 2.082±0.03 2.689±0.41 1.451±0.44 3.179±0.72 1.593±0.19 1.404±0.10 1.418±0.23 2.578±0.44 3.479±0.00 1.632±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000553 CIL_000553_0002 CGP 7:127769815-127800122
CIL_00044U CIL_00044U_0003 CGP 7:127776670-127803802

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0005634 ISO nucleus
GO:0019827 IMP stem cell maintenance
GO:0035097 ISO histone methyltransferase complex
GO:0042800 IEA histone methyltransferase activity (H3-K4 specific)
GO:0048188 IEA Set1C/COMPASS complex
GO:0051568 IMP histone H3-K4 methylation
GO:2000179 IMP positive regulation of neural precursor cell proliferation
GO:2000648 IMP positive regulation of stem cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086165 setd1ba-001 protein_coding Danio_rerio 0 303
ENST00000262519 SETD1A-001 protein_coding Homo_sapiens 0 4244
ENST00000452917 SETD1A-002 protein_coding Homo_sapiens 0 992

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