C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA splicing endonuclease 2 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042389 Tsen2 10090 + 6:115544664-115578350 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000040234 Tsen2-001 115544664-115578350 protein_coding
  ENSMUST00000123359 Tsen2-003 115544702-115559742 processed_transcript
  ENSMUST00000130425 Tsen2-004 115544664-115554272 retained_intron
  ENSMUST00000138200 Tsen2-002 115544706-115552361 retained_intron
  ENSMUST00000143520 Tsen2-005 115574448-115577991 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040234ENSMUST00000123359ENSMUST00000138200ENSMUST00000143520
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040234 3.809±0.34 1.247±0.67 4.186±0.32 5.620±2.02 1.486±0.37 0.891±0.32 1.558±0.37 2.304±0.29 3.002±1.34 1.515±0.48 2.869±0.33 2.570±1.26 3.935±2.05 0.384±0.12
ENSMUST00000123359 N/A N/A N/A 2.750±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.697±0.34
ENSMUST00000138200 0.280±0.00 0.200±0.00 N/A 0.123±0.00 0.096±0.00 N/A N/A 0.125±0.01 N/A N/A N/A 0.870±0.02 N/A 0.033±0.02
ENSMUST00000143520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.603±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004K9 CIL_0004K9_0002 CGP 6:115361221-115578350
CIL_0005SH CIL_0005SH_0002 CGP 6:115544664-115592576

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0000214 IEA tRNA-intron endonuclease complex
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0016829 IEA lyase activity
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000091851 tsen2 tRNA splicing endonuclease 2 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000154743 TSEN2 TSEN2 tRNA splicing endonuclease subunit protein_coding Homo_sapiens

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