C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA splicing endonuclease 2 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000040234 Tsen2-001 ENSMUSG00000042389 10090 + 6:115544664-115578350 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000040234
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000040234 3.809±0.34 1.247±0.67 4.186±0.32 5.620±2.02 1.486±0.37 0.891±0.32 1.558±0.37 2.304±0.29 3.002±1.34 1.515±0.48 2.869±0.33 2.570±1.26 3.935±2.05 0.384±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004K9 CIL_0004K9_0002 CGP 6:115361221-115578350
CIL_0005SH CIL_0005SH_0002 CGP 6:115544664-115592576

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000213 IEA tRNA-intron endonuclease activity
GO:0000214 IEA tRNA-intron endonuclease complex
GO:0003676 IEA nucleic acid binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005813 IEA centrosome
GO:0006388 IEA tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 IEA mRNA processing
GO:0016829 IEA lyase activity
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000284995 TSEN2-001 protein_coding Homo_sapiens 0 562
ENST00000402228 TSEN2-002 protein_coding Homo_sapiens 0 562
ENST00000415684 TSEN2-006 protein_coding Homo_sapiens 0 481
ENST00000444864 TSEN2-201 protein_coding Homo_sapiens 0 326
ENST00000446004 TSEN2-004 protein_coding Homo_sapiens 0 337
ENST00000454502 TSEN2-003 protein_coding Homo_sapiens 0 562
ENST00000473755 TSEN2-005 retained_intron Homo_sapiens 0 326

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