C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004K9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000132170-ENSG00000154743 CGP 9606 3:12287368-12539623
GeneTranscriptPositionBiotype
ENSG00000132170 (PPARG)
peroxisome proliferator-activated receptor gamma 		ENST00000287820 (PPARG-002) 12351472-12434356 protein_coding
ENST00000309576 (PPARG-007) 12287860-12434344 protein_coding
ENST00000396999 (PPARG-014) 12379706-12417154 nonsense_mediated_decay
ENST00000397000 (PPARG-009) 12312388-12434216 protein_coding
ENST00000397010 (PPARG-003) 12287368-12434344 protein_coding
ENST00000397012 (PPARG-001) 12288838-12434344 protein_coding
ENST00000397015 (PPARG-013) 12287901-12434311 protein_coding
ENST00000397023 (PPARG-011) 12351569-12434344 nonsense_mediated_decay
ENST00000397026 (PPARG-005) 12289071-12434339 protein_coding
ENST00000397029 (PPARG-015) 12287388-12381491 protein_coding
ENST00000438682 (PPARG-017) 12305773-12381392 protein_coding
ENST00000455517 (PPARG-004) 12288838-12379834 protein_coding
ENST00000477039 (PPARG-012) 12351472-12406846 retained_intron
ENST00000497594 (PPARG-008) 12289111-12406846 retained_intron
ENSG00000154743 (TSEN2)
TSEN2 tRNA splicing endonuclease subunit 		ENST00000284995 (TSEN2-001) 12484511-12533317 protein_coding
ENST00000402228 (TSEN2-002) 12484491-12533317 protein_coding
ENST00000412698 (TSEN2-008) 12529871-12539620 protein_coding
ENST00000415684 (TSEN2-006) 12489780-12533659 protein_coding
ENST00000444864 (TSEN2-201) 12484511-12531013 protein_coding
ENST00000446004 (TSEN2-004) 12484432-12528924 protein_coding
ENST00000454502 (TSEN2-003) 12484443-12533317 protein_coding
ENST00000455118 (TSEN2-007) 12529779-12539288 nonsense_mediated_decay
ENST00000473755 (TSEN2-005) 12484511-12539623 retained_intron
ENST00000475595 (TSEN2-009) 12530848-12533307 processed_transcript
ENST00000490981 (TSEN2-010) 12503446-12505574 retained_intron
ENSG00000200114 (RNA5SP123)
RNA, 5S ribosomal pseudogene 123 		ENST00000363244 (RNA5SP123-201) 12511095-12511213 rRNA
ENSG00000225026 (AC091492.2)
 ENST00000419844 (AC091492.2-001) 12328003-12328274 processed_pseudogene
ENSG00000251774 (RNU6-377P)
RNA, U6 small nuclear 377, pseudogene 		ENST00000515965 (RNU6-377P-201) 12514706-12514807 snRNA

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Structures from Ensembl
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CIL_0004K9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000440-ENSMUSG00000042389 CGP 10090 6:115361221-115578350
GeneTranscriptPositionBiotype
ENSMUSG00000000440 (Pparg)
peroxisome proliferator activated receptor gamma 		ENSMUST00000000450 (Pparg-201) 115422066-115490401 protein_coding
ENSMUST00000171644 (Pparg-202) 115361221-115490401 protein_coding
ENSMUSG00000042389 (Tsen2)
tRNA splicing endonuclease 2 homolog (S. cerevisiae) 		ENSMUST00000040234 (Tsen2-001) 115544664-115578350 protein_coding
ENSMUST00000123359 (Tsen2-003) 115544702-115559742 processed_transcript
ENSMUST00000130425 (Tsen2-004) 115544664-115554272 retained_intron
ENSMUST00000138200 (Tsen2-002) 115544706-115552361 retained_intron
ENSMUST00000143520 (Tsen2-005) 115574448-115577991 processed_transcript

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004K9_0001ENSG00000132170ENST00000287820ENST00000309576ENST00000396999ENST00000397000ENST00000397010ENST00000397012ENST00000397015ENST00000397023ENST00000397026ENST00000397029ENST00000438682ENST00000455517ENST00000477039ENST00000497594ENSG00000154743ENST00000284995ENST00000402228ENST00000412698ENST00000415684ENST00000444864ENST00000446004ENST00000454502ENST00000455118ENST00000473755ENST00000475595ENST00000490981ENSG00000200114ENST00000363244ENSG00000225026ENST00000419844ENSG00000251774ENST00000515965CIL_0004K9_0002ENSMUSG00000000440ENSMUST00000000450ENSMUST00000171644ENSMUSG00000042389ENSMUST00000040234ENSMUST00000123359ENSMUST00000130425ENSMUST00000138200ENSMUST00000143520
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004K9_0001ENSG00000132170ENST00000287820ENST00000309576ENST00000397000ENST00000397010ENST00000397012ENST00000397015ENST00000397023ENST00000497594ENSG00000154743ENST00000284995ENST00000402228ENST00000412698ENST00000415684ENST00000444864ENST00000446004ENST00000454502ENST00000455118ENST00000473755ENST00000475595ENSG00000200114ENST00000363244ENSG00000225026ENST00000419844ENSG00000251774ENST00000515965CIL_0004K9_0002ENSMUSG00000000440ENSMUST00000000450ENSMUST00000171644ENSMUSG00000042389ENSMUST00000040234ENSMUST00000123359ENSMUST00000138200ENSMUST00000143520
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000132170 ENST00000287820 N/A N/A N/A N/A 8.216±0.00 N/A N/A N/A N/A 3.536±1.77 N/A N/A N/A N/A
ENST00000309576 26.414±0.00 6.968±0.00 N/A N/A 18.479±0.00 7.252±0.00 2.362±0.00 3.967±0.00 1.156±0.00 N/A N/A 4.939±0.00 5.707±0.89 3.971±0.00
ENST00000396999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397000 N/A N/A N/A N/A N/A N/A 2.388±0.00 3.086±0.00 N/A N/A N/A N/A N/A 1.047±0.00
ENST00000397010 N/A N/A 1.211±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397012 N/A N/A N/A N/A N/A 3.488±0.00 N/A N/A N/A 1.700±0.00 N/A 2.186±0.00 4.335±0.09 N/A
ENST00000397015 24.714±0.00 4.264±0.00 3.373±0.00 1.176±0.29 22.943±13.01 4.973±0.00 4.490±0.00 4.772±0.00 5.565±4.30 6.400±0.00 0.966±0.29 6.108±4.60 20.593±2.17 1.955±0.37
ENST00000397023 N/A N/A N/A N/A N/A N/A 0.572±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000397026 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000397029 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000438682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455517 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477039 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497594 N/A N/A N/A 0.218±0.00 N/A 4.210±0.00 N/A N/A N/A 1.747±0.37 N/A 1.774±0.00 N/A N/A
ENSG00000154743 ENST00000284995 N/A N/A N/A N/A 0.659±0.00 N/A N/A N/A 1.091±0.57 N/A 1.068±0.00 1.137±0.00 0.472±0.00 1.365±0.57
ENST00000402228 0.774±0.00 N/A 0.295±0.00 0.817±0.24 N/A N/A 0.352±0.00 0.800±0.00 N/A N/A N/A 2.208±0.57 N/A N/A
ENST00000412698 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.509±0.00 2.555±1.16 N/A N/A N/A
ENST00000415684 N/A 1.252±0.00 N/A 0.610±0.00 0.823±0.00 1.500±0.00 N/A 0.731±0.43 N/A 0.245±0.13 N/A 1.350±0.10 0.733±0.04 0.942±0.00
ENST00000444864 N/A N/A 0.483±0.00 N/A N/A 0.731±0.00 0.387±0.00 N/A N/A N/A N/A 2.304±0.54 N/A 0.855±0.00
ENST00000446004 N/A N/A N/A N/A 1.696±0.00 1.800±0.00 1.635±0.00 N/A N/A 0.758±0.00 1.730±0.14 3.414±0.00 1.060±0.00 2.481±0.53
ENST00000454502 N/A N/A N/A 0.555±0.00 N/A N/A N/A N/A N/A N/A N/A 2.737±1.23 N/A N/A
ENST00000455118 N/A 2.746±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.744±0.00 N/A N/A N/A
ENST00000473755 N/A N/A N/A N/A N/A N/A N/A N/A 0.473±0.32 0.640±0.00 N/A 1.968±0.00 N/A N/A
ENST00000475595 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.422±0.00 N/A N/A N/A N/A
ENST00000490981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000200114 ENST00000363244 N/A 0.199±0.00 N/A 0.624±0.00 N/A N/A N/A N/A N/A N/A N/A 1.322±0.00 N/A N/A
ENSG00000225026 ENST00000419844 N/A N/A N/A N/A 5.563±5.52 4.120±4.00 0.308±0.27 0.391±0.00 18.362±0.00 4.654±0.00 N/A 0.710±0.41 2.004±0.00 0.394±0.00
ENSG00000251774 ENST00000515965 0.366±0.00 N/A N/A 0.184±0.00 0.360±0.00 N/A N/A 0.359±0.00 N/A N/A N/A 56.184±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000440 ENSMUST00000000450 99.169±43.34 20.220±5.88 9.679±2.80 N/A 84.514±4.37 10.073±2.30 3.651±1.48 5.713±0.58 0.581±0.13 7.790±0.96 0.497±0.17 18.623±5.66 4.726±0.00 0.300±0.10
ENSMUST00000171644 N/A N/A 18.459±1.67 0.183±0.15 N/A 6.444±2.33 1.637±0.69 0.946±0.15 1.844±1.37 1.346±0.21 0.611±0.33 6.070±4.71 59.644±23.47 0.570±0.34
ENSMUSG00000042389 ENSMUST00000040234 3.809±0.34 1.247±0.67 4.186±0.32 5.620±2.02 1.486±0.37 0.891±0.32 1.558±0.37 2.304±0.29 3.002±1.34 1.515±0.48 2.869±0.33 2.570±1.26 3.935±2.05 0.384±0.12
ENSMUST00000123359 N/A N/A N/A 2.750±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.697±0.34
ENSMUST00000130425 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138200 0.280±0.00 0.200±0.00 N/A 0.123±0.00 0.096±0.00 N/A N/A 0.125±0.01 N/A N/A N/A 0.870±0.02 N/A 0.033±0.02
ENSMUST00000143520 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.603±0.00

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