C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: additional sex combs like 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042548 Asxl1 10090 + 2:153345845-153404007 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000109790 Asxl1-001 153345845-153404007 protein_coding
  ENSMUST00000123215 Asxl1-002 153347675-153357178 processed_transcript
  ENSMUST00000138571 Asxl1-004 153392860-153396837 retained_intron
  ENSMUST00000144722 Asxl1-003 153347803-153391594 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109790ENSMUST00000138571
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109790 5.462±2.89 3.751±0.80 5.552±1.42 11.493±3.57 5.417±1.89 5.715±1.12 2.636±0.87 4.559±0.84 3.346±2.62 8.222±0.48 2.506±0.11 9.291±2.50 5.921±1.86 5.306±4.93
ENSMUST00000138571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 30.388±0.00 N/A 73.108±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A4 CIL_0008A4_0002 VISTA 2:153181176-153785061
CIL_0008NQ CIL_0008NQ_0002 VISTA 2:153260290-153861940
CIL_0001KF CIL_0001KF_0002 CGP 2:153291413-153404007
CIL_0001KE CIL_0001KE_0002 CGP 2:153345845-153529971

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0003713 IDA transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0032526 IDA response to retinoic acid
GO:0035359 IDA negative regulation of peroxisome proliferator activated receptor signaling pathway
GO:0035517 ISS PR-DUB complex
GO:0035522 ISS monoubiquitinated histone H2A deubiquitination
GO:0042974 IDA retinoic acid receptor binding
GO:0042975 IDA peroxisome proliferator activated receptor binding
GO:0045599 IDA negative regulation of fat cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048386 IDA positive regulation of retinoic acid receptor signaling pathway
GO:0048387 IDA negative regulation of retinoic acid receptor signaling pathway
GO:0060348 IMP bone development
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000036956 asxl1 additional sex combs like 1 (Drosophila) protein_coding Danio_rerio
ENSG00000171456 ASXL1 additional sex combs like transcriptional regulator 1 protein_coding Homo_sapiens

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