C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: additional sex combs like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000109790 Asxl1-001 ENSMUSG00000042548 10090 + 2:153345845-153404007 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000109790
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000109790 5.462±2.89 3.751±0.80 5.552±1.42 11.493±3.57 5.417±1.89 5.715±1.12 2.636±0.87 4.559±0.84 3.346±2.62 8.222±0.48 2.506±0.11 9.291±2.50 5.921±1.86 5.306±4.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A4 CIL_0008A4_0002 VISTA 2:153181176-153785061
CIL_0008NQ CIL_0008NQ_0002 VISTA 2:153260290-153861940
CIL_0001KF CIL_0001KF_0002 CGP 2:153291413-153404007
CIL_0001KE CIL_0001KE_0002 CGP 2:153345845-153529971

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0003713 IDA transcription coactivator activity
GO:0003714 IDA transcription corepressor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0032526 IDA response to retinoic acid
GO:0035359 IDA negative regulation of peroxisome proliferator activated receptor signaling pathway
GO:0035517 ISS PR-DUB complex
GO:0035522 ISS monoubiquitinated histone H2A deubiquitination
GO:0042974 IDA retinoic acid receptor binding
GO:0042975 IDA peroxisome proliferator activated receptor binding
GO:0045599 IDA negative regulation of fat cell differentiation
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0048386 IDA positive regulation of retinoic acid receptor signaling pathway
GO:0048387 IDA negative regulation of retinoic acid receptor signaling pathway
GO:0060348 IMP bone development
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306058 ASXL1-201 protein_coding Homo_sapiens 0 2656
ENST00000375687 ASXL1-001 protein_coding Homo_sapiens 0 3162
ENST00000375689 ASXL1-002 protein_coding Homo_sapiens 0 274
ENST00000470145 ASXL1-004 retained_intron Homo_sapiens 0 424
ENST00000497249 ASXL1-003 protein_coding Homo_sapiens 0 313
ENST00000542461 ASXL1-202 protein_coding Homo_sapiens 0 765
ENST00000555343 ASXL1-005 protein_coding Homo_sapiens 0 276
ENST00000613218 ASXL1-203 protein_coding Homo_sapiens 0 3166
ENST00000620121 ASXL1-204 protein_coding Homo_sapiens 0 2787

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