C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: oligonucleotide/oligosaccharide-binding fold containing 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000042694 Obfc1 10090 - 19:47501033-47537507 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049369 Obfc1-001 47501033-47537119 protein_coding
  ENSMUST00000182251 Obfc1-009 47524073-47536896 processed_transcript
  ENSMUST00000182291 Obfc1-006 47524707-47537507 protein_coding
  ENSMUST00000182431 Obfc1-010 47522132-47536964 processed_transcript
  ENSMUST00000182654 Obfc1-008 47532352-47536262 processed_transcript
  ENSMUST00000182714 Obfc1-007 47535915-47537046 retained_intron
  ENSMUST00000182808 Obfc1-002 47507205-47537036 protein_coding
  ENSMUST00000182873 Obfc1-005 47501038-47508773 processed_transcript
  ENSMUST00000183004 Obfc1-003 47524202-47537094 retained_intron
  ENSMUST00000183283 Obfc1-004 47536290-47537024 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049369ENSMUST00000182808ENSMUST00000182873
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049369 3.489±0.55 0.597±0.00 4.062±0.63 4.912±0.95 2.162±0.96 0.883±0.24 2.380±0.21 1.730±0.54 1.869±1.41 2.335±0.30 1.463±0.30 4.121±1.80 9.986±5.54 4.740±0.87
ENSMUST00000182808 1.027±0.00 0.730±0.00 N/A N/A N/A 0.901±0.00 N/A 0.664±0.00 0.483±0.04 N/A 0.226±0.00 2.176±0.00 N/A N/A
ENSMUST00000182873 7.669±2.69 5.272±1.43 4.014±0.00 5.705±2.11 5.726±0.78 7.295±1.40 3.327±1.10 3.994±0.30 1.672±0.71 7.577±1.49 1.153±0.06 12.375±3.02 13.426±8.97 6.066±2.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006UD CIL_0006UD_0002 CGP 19:47260174-47537507
CIL_000663 CIL_000663_0002 CGP 19:47501033-47645246

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000723 IEA telomere maintenance
GO:0000784 ISS nuclear chromosome, telomeric region
GO:0003697 IDA single-stranded DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0010833 ISS telomere maintenance via telomere lengthening
GO:0043047 ISS single-stranded telomeric DNA binding
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045111 IEA intermediate filament cytoskeleton
GO:0045740 IDA positive regulation of DNA replication
GO:0070188 IDA Stn1-Ten1 complex

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000007734 obfc1 oligonucleotide/oligosaccharide-binding fold containing 1 protein_coding Danio_rerio
ENSG00000107960 OBFC1 oligonucleotide/oligosaccharide-binding fold containing 1 protein_coding Homo_sapiens

Loading