C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VI, alpha 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000043719 Col6a6 10090 - 9:105687809-105828160 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000060896 Col6a6-002 105774112-105809648 protein_coding
  ENSMUST00000098441 Col6a6-001 105687809-105828160 protein_coding
  ENSMUST00000166431 Col6a6-201 105689417-105828085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060896ENSMUST00000098441ENSMUST00000166431
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060896 N/A N/A N/A N/A N/A 0.015±0.00 N/A N/A N/A N/A N/A N/A N/A 0.087±0.01
ENSMUST00000098441 5.082±4.11 0.165±0.04 0.256±0.05 0.081±0.05 0.693±0.12 0.035±0.00 0.660±0.21 0.115±0.01 0.090±0.09 0.216±0.01 0.379±0.12 1.825±1.01 0.052±0.03 N/A
ENSMUST00000166431 N/A 0.050±0.01 N/A 0.141±0.00 0.148±0.02 0.016±0.00 0.371±0.00 0.058±0.03 0.008±0.00 N/A N/A 0.441±0.21 0.065±0.05 0.155±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 IDA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion
GO:0031012 ISO extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079752 col6a6 collagen, type VI, alpha 6 protein_coding Danio_rerio
ENSG00000206384 COL6A6 collagen, type VI, alpha 6 protein_coding Homo_sapiens

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