C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VI, alpha 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098441 Col6a6-001 ENSMUSG00000043719 10090 - 9:105687809-105828160 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000098441
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000098441 5.082±4.11 0.165±0.04 0.256±0.05 0.081±0.05 0.693±0.12 0.035±0.00 0.660±0.21 0.115±0.01 0.090±0.09 0.216±0.01 0.379±0.12 1.825±1.01 0.052±0.03

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 IDA extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion
GO:0031012 ISO extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265379 COL6A5-201 protein_coding Homo_sapiens 0 555
ENST00000312481 COL6A5-001 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000358511 COL6A6-001 protein_coding Homo_sapiens 0 6198
ENST00000506143 COL6A6-002 nonsense_mediated_decay Homo_sapiens 0 830

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