C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type VI, alpha 6
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000206384 COL6A6 9606 + 3:130560334-130678155 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000358511 COL6A6-001 130560334-130678155 protein_coding
  ENST00000506143 COL6A6-002 130581682-130677044 nonsense_mediated_decay
  ENST00000511332 COL6A6-003 130581741-130593224 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000358511ENST00000506143ENST00000511332
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000358511 0.085±0.00 0.027±0.00 N/A 0.232±0.02 0.298±0.20 0.266±0.00 0.191±0.18 2.204±0.72 N/A 0.034±0.01 0.176±0.18 0.113±0.00
ENST00000506143 0.179±0.00 N/A 0.015±0.00 0.750±0.00 0.345±0.00 0.072±0.00 0.018±0.00 5.603±0.00 0.018±0.00 0.069±0.03 0.143±0.14 0.109±0.02
ENST00000511332 N/A N/A N/A N/A N/A N/A 0.037±0.00 N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052M CIL_00052M_0002 CGP 3:130560334-130746829

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005576 TAS extracellular region
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IEA collagen trimer
GO:0007155 IEA cell adhesion
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031012 IDA extracellular matrix

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000079752 col6a6 collagen, type VI, alpha 6 protein_coding Danio_rerio
ENSMUSG00000043719 Col6a6 collagen, type VI, alpha 6 protein_coding Mus_musculus

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