C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type VI, alpha 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000166431 Col6a6-201 ENSMUSG00000043719 10090 - 9:105689417-105828085 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000166431
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000166431 0.050±0.01 0.141±0.00 0.148±0.02 0.016±0.00 0.371±0.00 0.058±0.03 0.008±0.00 0.441±0.21 0.065±0.05 0.155±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005576 IDA extracellular region
GO:0031012 ISO extracellular matrix

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265379 COL6A5-201 protein_coding Homo_sapiens 0 555
ENST00000312481 COL6A5-001 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000358511 COL6A6-001 protein_coding Homo_sapiens 0 6176
ENST00000506143 COL6A6-002 nonsense_mediated_decay Homo_sapiens 0 830

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