C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clarin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055636 Clrn1-002 ENSMUSG00000043850 10090 - 3:58844028-58885212 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainColonHeartLiverOvaryPlacentaENSMUST00000055636
Transcript ID Adipose Adrenal Brain Colon Heart Liver Ovary Placenta
ENSMUST00000055636 0.047±0.02 0.062±0.02 0.028±0.00 0.029±0.00 0.010±0.00 0.020±0.00 0.088±0.07 0.019±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ID CIL_0002ID_0002 CGP 3:58844028-59318410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 ISO plasma membrane
GO:0005902 ISO microvillus
GO:0007015 ISO actin filament organization
GO:0007601 IEA visual perception
GO:0007605 IMP sensory perception of sound
GO:0010592 ISO positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0030027 ISO lamellipodium
GO:0045494 IEA photoreceptor cell maintenance
GO:0048870 ISO cell motility
GO:0050885 IMP neuromuscular process controlling balance
GO:0050896 IEA response to stimulus
GO:0050953 IEA sensory perception of light stimulus
GO:0050957 IEA equilibrioception
GO:0060088 IMP auditory receptor cell stereocilium organization
GO:0060117 IMP auditory receptor cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295911 CLRN1-003 protein_coding Homo_sapiens 0 353
ENST00000327047 CLRN1-001 protein_coding Homo_sapiens 0 549
ENST00000328863 CLRN1-006 protein_coding Homo_sapiens 0 351
ENST00000468836 CLRN1-005 protein_coding Homo_sapiens 0 357
ENST00000472224 CLRN1-004 retained_intron Homo_sapiens 9.99995e-41 171
ENST00000485607 CLRN1-002 protein_coding Homo_sapiens 0 207
ENST00000562308 RP11-166N6.3-002 nonsense_mediated_decay Homo_sapiens 9e-27 124
ENST00000565169 RP11-166N6.3-003 nonsense_mediated_decay Homo_sapiens 2e-36 156
ENST00000569170 RP11-166N6.3-001 nonsense_mediated_decay Homo_sapiens 2e-36 158

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