C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clarin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000051408 Clrn1-001 ENSMUSG00000043850 10090 - 3:58845981-58885340 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartLiverOvaryPlacentaENSMUST00000051408
Transcript ID Adrenal Brain Heart Liver Ovary Placenta
ENSMUST00000051408 0.139±0.00 0.066±0.04 0.029±0.00 0.008±0.00 0.081±0.06 0.066±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ID CIL_0002ID_0002 CGP 3:58844028-59318410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 ISO plasma membrane
GO:0005902 ISO microvillus
GO:0007015 ISO actin filament organization
GO:0007601 IEA visual perception
GO:0007605 IMP sensory perception of sound
GO:0010592 ISO positive regulation of lamellipodium assembly
GO:0016021 IEA integral component of membrane
GO:0030027 ISO lamellipodium
GO:0048870 ISO cell motility
GO:0050885 IMP neuromuscular process controlling balance
GO:0050896 IEA response to stimulus
GO:0060088 IMP auditory receptor cell stereocilium organization
GO:0060117 IMP auditory receptor cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295911 CLRN1-003 protein_coding Homo_sapiens 0 350
ENST00000327047 CLRN1-001 protein_coding Homo_sapiens 0 819
ENST00000328863 CLRN1-006 protein_coding Homo_sapiens 0 403
ENST00000468836 CLRN1-005 protein_coding Homo_sapiens 0 353
ENST00000472224 CLRN1-004 retained_intron Homo_sapiens 0 409
ENST00000485607 CLRN1-002 protein_coding Homo_sapiens 0 207
ENST00000562308 RP11-166N6.3-002 nonsense_mediated_decay Homo_sapiens 9e-27 124
ENST00000565169 RP11-166N6.3-003 nonsense_mediated_decay Homo_sapiens 2e-36 156
ENST00000569170 RP11-166N6.3-001 nonsense_mediated_decay Homo_sapiens 2e-36 158

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