C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clarin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072551 Clrn1-003 ENSMUSG00000043850 10090 - 3:58845215-58885212 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastOvaryPlacentaTestisENSMUST00000072551
Transcript ID Adipose Brain Breast Ovary Placenta Testis
ENSMUST00000072551 0.030±0.00 0.077±0.03 0.055±0.00 0.190±0.00 0.004±0.00 0.143±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ID CIL_0002ID_0002 CGP 3:58844028-59318410

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 ISO plasma membrane
GO:0005902 ISO microvillus
GO:0007015 ISO actin filament organization
GO:0007605 IMP sensory perception of sound
GO:0010592 ISO positive regulation of lamellipodium assembly
GO:0030027 ISO lamellipodium
GO:0048870 ISO cell motility
GO:0050885 IMP neuromuscular process controlling balance
GO:0060088 IMP auditory receptor cell stereocilium organization
GO:0060117 IMP auditory receptor cell development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295911 CLRN1-003 protein_coding Homo_sapiens 2.94273e-44 183
ENST00000327047 CLRN1-001 protein_coding Homo_sapiens 0 383
ENST00000328863 CLRN1-006 protein_coding Homo_sapiens 0 348
ENST00000468836 CLRN1-005 protein_coding Homo_sapiens 1.4013e-45 187

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