C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: WD repeat and FYVE domain containing 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053177 Wdfy3-001 ENSMUSG00000043940 10090 - 5:101832956-102069921 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000053177
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000053177 1.600±0.68 1.399±0.04 8.026±2.42 1.243±0.41 2.247±1.27 0.643±0.00 2.524±0.78 0.842±0.10 2.262±0.00 2.452±0.71 2.634±1.21 1.278±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00052U CIL_00052U_0003 CGP 5:101765130-102069921
CIL_0006J5 CIL_0006J5_0002 CGP 5:101832956-102897936

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003831 IDA beta-N-acetylglucosaminylglycopeptide beta-1,4-galactosyltransferase activity
GO:0005545 IEA 1-phosphatidylinositol binding
GO:0005635 ISA nuclear envelope
GO:0005737 ISA cytoplasm
GO:0005776 ISA autophagic vacuole
GO:0016234 ISS inclusion body
GO:0016239 ISS positive regulation of macroautophagy
GO:0016605 ISS PML body
GO:0019898 ISA extrinsic component of membrane
GO:0034274 IEA Atg12-Atg5-Atg16 complex
GO:0035973 ISS aggrephagy
GO:0046872 IEA metal ion binding
GO:0097635 IDA extrinsic component of autophagic vacuole membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114481 wdfy3-201 protein_coding Danio_rerio 0 2410
ENST00000295888 WDFY3-001 protein_coding Homo_sapiens 0 7936
ENST00000425179 WDFY3-002 retained_intron Homo_sapiens 0 1170
ENST00000426414 WDFY3-003 retained_intron Homo_sapiens 0 2787
ENST00000502713 WDFY3-006 protein_coding Homo_sapiens 0.00000000000003 82
ENST00000504990 WDFY3-007 retained_intron Homo_sapiens 0 355
ENST00000505923 WDFY3-011 processed_transcript Homo_sapiens 0 292
ENST00000509172 WDFY3-005 protein_coding Homo_sapiens 0 315
ENST00000512267 WDFY3-008 processed_transcript Homo_sapiens 0 278
ENST00000514711 WDFY3-013 protein_coding Homo_sapiens 0 2132

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