C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ras and Rab interactor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056950 Rin3-001 ENSMUSG00000044456 10090 + 12:102283048-102390855 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056950 5.606±0.78 2.556±0.31 1.622±0.67 0.826±0.53 6.530±2.09 3.203±0.74 2.342±0.67 4.629±0.62 3.128±0.96 14.286±1.13 1.093±0.37 2.716±0.60 4.629±3.68 0.640±0.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000539 CIL_000539_0002 CGP 12:102128733-102390855
CIL_000536 CIL_000536_0002 CGP 12:102283048-102439813

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005096 IEA GTPase activator activity
GO:0005515 IEA protein binding
GO:0005769 ISS early endosome
GO:0007165 IEA signal transduction
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0017137 ISS Rab GTPase binding
GO:0031410 ISS cytoplasmic vesicle
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216487 RIN3-001 protein_coding Homo_sapiens 0 2202
ENST00000418924 RIN3-005 processed_transcript Homo_sapiens 0 2043
ENST00000553959 RIN3-014 processed_transcript Homo_sapiens 0 320
ENST00000553992 RIN3-012 processed_transcript Homo_sapiens 0 215
ENST00000555589 RIN3-003 nonsense_mediated_decay Homo_sapiens 0 1700
ENST00000556418 RIN3-007 protein_coding Homo_sapiens 0 1299
ENST00000620541 RIN3-201 protein_coding Homo_sapiens 0 1607

Loading