C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sex comb on midleg-like 4 (Drosophila)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000044770 Scml4 10090 + 10:42860370-42960780 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000063063 Scml4-002 42860370-42960780 protein_coding
  ENSMUST00000105494 Scml4-003 42860793-42960778 protein_coding
  ENSMUST00000105495 Scml4-001 42860667-42934361 protein_coding
  ENSMUST00000125576 Scml4-008 42902473-42935139 protein_coding
  ENSMUST00000127675 Scml4-006 42939881-42958721 processed_transcript
  ENSMUST00000130511 Scml4-004 42934338-42958770 retained_intron
  ENSMUST00000136841 Scml4-007 42865514-42930419 protein_coding
  ENSMUST00000153091 Scml4-005 42934916-42948199 retained_intron
  ENSMUST00000157071 Scml4-009 42860543-42930554 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000063063ENSMUST00000105494ENSMUST00000105495ENSMUST00000125576ENSMUST00000127675ENSMUST00000130511ENSMUST00000153091
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000063063 0.214±0.17 0.717±0.20 0.076±0.01 2.334±0.18 2.264±1.11 0.845±0.03 0.213±0.03 0.245±0.09 0.100±0.00 0.358±0.09 N/A 0.246±0.10 N/A N/A
ENSMUST00000105494 0.407±0.21 0.662±0.50 0.136±0.03 0.576±0.00 1.847±0.36 1.634±0.35 0.210±0.05 N/A 0.326±0.22 N/A 0.142±0.11 0.481±0.18 0.179±0.08 0.103±0.03
ENSMUST00000105495 N/A N/A N/A N/A 3.055±0.20 N/A N/A 0.373±0.11 0.063±0.03 0.564±0.25 N/A N/A N/A N/A
ENSMUST00000125576 N/A 0.890±0.25 N/A N/A 3.731±0.82 N/A N/A 0.230±0.03 0.103±0.06 0.373±0.00 N/A N/A N/A N/A
ENSMUST00000127675 0.101±0.00 N/A N/A N/A N/A 7.430±0.70 N/A 0.096±0.00 0.080±0.07 N/A N/A 0.530±0.23 0.383±0.26 0.301±0.11
ENSMUST00000130511 0.627±0.01 0.487±0.19 0.122±0.00 N/A 2.246±0.73 N/A 0.220±0.07 0.192±0.09 0.072±0.01 0.365±0.14 0.026±0.00 0.484±0.24 0.145±0.00 N/A
ENSMUST00000153091 N/A N/A N/A N/A N/A N/A N/A 0.142±0.00 0.139±0.13 0.340±0.00 0.064±0.00 0.834±0.45 0.065±0.00 N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116
CIL_0006OL CIL_0006OL_0002 CGP 10:42761496-42960780

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000017266 scml4 sex comb on midleg-like 4 (Drosophila) protein_coding Danio_rerio
ENSG00000146285 SCML4 sex comb on midleg-like 4 (Drosophila) protein_coding Homo_sapiens

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