C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sex comb on midleg-like 4 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063063 Scml4-002 ENSMUSG00000044770 10090 + 10:42860370-42960780 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryENSMUST00000063063
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary
ENSMUST00000063063 0.214±0.17 0.717±0.20 0.076±0.01 2.334±0.18 2.264±1.11 0.845±0.03 0.213±0.03 0.245±0.09 0.100±0.00 0.358±0.09 0.246±0.10

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009BP CIL_0009BP_0002 VISTA 10:42334080-42935172
CIL_0008G4 CIL_0008G4_0002 VISTA 10:42335863-42936982
CIL_0007KA CIL_0007KA_0003 UCNEbase 10:42339928-43024116
CIL_0006OL CIL_0006OL_0002 CGP 10:42761496-42960780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003677 IEA DNA binding
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369020 SCML4-005 protein_coding Homo_sapiens 0 979
ENST00000369022 SCML4-008 protein_coding Homo_sapiens 0 835
ENST00000369025 SCML4-002 protein_coding Homo_sapiens 0 403

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