C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006OL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017740-ENSDARG00000017266 CGP 7955 20:32540629-32620948
GeneTranscriptPositionBiotype
ENSDARG00000017266 (scml4)
sex comb on midleg-like 4 (Drosophila) 		ENSDART00000009691 (scml4-201) 32592959-32620948 protein_coding
ENSDART00000147319 (scml4-001) 32562457-32615584 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0006OL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019802-ENSMUSG00000044770 CGP 10090 10:42761496-42960780
GeneTranscriptPositionBiotype
ENSMUSG00000019802 (Sec63)
SEC63-like (S. cerevisiae) 		ENSMUST00000019937 (Sec63-001) 42761496-42832514 protein_coding
ENSMUST00000105496 (Sec63-005) 42817928-42829283 processed_transcript
ENSMUST00000124613 (Sec63-004) 42817928-42829280 processed_transcript
ENSMUST00000144228 (Sec63-003) 42761806-42812742 retained_intron
ENSMUST00000155410 (Sec63-002) 42761615-42830392 retained_intron
ENSMUSG00000044770 (Scml4)
sex comb on midleg-like 4 (Drosophila) 		ENSMUST00000063063 (Scml4-002) 42860370-42960780 protein_coding
ENSMUST00000105494 (Scml4-003) 42860793-42960778 protein_coding
ENSMUST00000105495 (Scml4-001) 42860667-42934361 protein_coding
ENSMUST00000125576 (Scml4-008) 42902473-42935139 protein_coding
ENSMUST00000127675 (Scml4-006) 42939881-42958721 processed_transcript
ENSMUST00000130511 (Scml4-004) 42934338-42958770 retained_intron
ENSMUST00000136841 (Scml4-007) 42865514-42930419 protein_coding
ENSMUST00000153091 (Scml4-005) 42934916-42948199 retained_intron
ENSMUST00000157071 (Scml4-009) 42860543-42930554 protein_coding
ENSMUSG00000087719 (Gm26464)
predicted gene, 26464 		ENSMUST00000157094 (Gm26464-201) 42820463-42820767 misc_RNA
ENSMUSG00000097008 (Gm26860)
predicted gene, 26860 		ENSMUST00000181674 (Gm26860-201) 42761596-42763635 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006OL_0001ENSDARG00000017266ENSDART00000009691ENSDART00000147319CIL_0006OL_0002ENSMUSG00000019802ENSMUST00000019937ENSMUST00000105496ENSMUST00000124613ENSMUST00000144228ENSMUST00000155410ENSMUSG00000044770ENSMUST00000063063ENSMUST00000105494ENSMUST00000105495ENSMUST00000125576ENSMUST00000127675ENSMUST00000130511ENSMUST00000136841ENSMUST00000153091ENSMUST00000157071ENSMUSG00000087719ENSMUST00000157094ENSMUSG00000097008ENSMUST00000181674
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006OL_0001ENSDARG00000017266ENSDART00000009691ENSDART00000147319CIL_0006OL_0002ENSMUSG00000019802ENSMUST00000019937ENSMUST00000124613ENSMUST00000155410ENSMUSG00000044770ENSMUST00000063063ENSMUST00000105494ENSMUST00000105495ENSMUST00000125576ENSMUST00000127675ENSMUST00000130511ENSMUST00000153091ENSMUSG00000087719ENSMUST00000157094ENSMUSG00000097008ENSMUST00000181674
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017266 ENSDART00000009691 N/A N/A N/A 3.521±3.27 N/A N/A 0.582±0.08 0.446±0.08 0.132±0.00 N/A 0.281±0.00 N/A N/A N/A
ENSDART00000147319 N/A N/A N/A 1.908±0.00 N/A N/A 0.110±0.00 N/A 0.033±0.00 N/A 0.235±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019802 ENSMUST00000019937 5.829±1.03 4.983±1.24 16.874±0.85 12.022±4.67 3.314±0.72 3.657±1.42 3.544±0.26 6.484±1.02 9.353±1.84 8.889±1.51 4.719±0.23 7.171±5.38 12.356±2.12 4.234±0.75
ENSMUST00000105496 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000124613 N/A N/A N/A 67.249±0.00 N/A N/A N/A N/A 14.551±0.00 N/A N/A 179.914±0.00 83.048±67.71 54.505±89.12
ENSMUST00000144228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.534±0.00
ENSMUSG00000044770 ENSMUST00000063063 0.214±0.17 0.717±0.20 0.076±0.01 2.334±0.18 2.264±1.11 0.845±0.03 0.213±0.03 0.245±0.09 0.100±0.00 0.358±0.09 N/A 0.246±0.10 N/A N/A
ENSMUST00000105494 0.407±0.21 0.662±0.50 0.136±0.03 0.576±0.00 1.847±0.36 1.634±0.35 0.210±0.05 N/A 0.326±0.22 N/A 0.142±0.11 0.481±0.18 0.179±0.08 0.103±0.03
ENSMUST00000105495 N/A N/A N/A N/A 3.055±0.20 N/A N/A 0.373±0.11 0.063±0.03 0.564±0.25 N/A N/A N/A N/A
ENSMUST00000125576 N/A 0.890±0.25 N/A N/A 3.731±0.82 N/A N/A 0.230±0.03 0.103±0.06 0.373±0.00 N/A N/A N/A N/A
ENSMUST00000127675 0.101±0.00 N/A N/A N/A N/A 7.430±0.70 N/A 0.096±0.00 0.080±0.07 N/A N/A 0.530±0.23 0.383±0.26 0.301±0.11
ENSMUST00000130511 0.627±0.01 0.487±0.19 0.122±0.00 N/A 2.246±0.73 N/A 0.220±0.07 0.192±0.09 0.072±0.01 0.365±0.14 0.026±0.00 0.484±0.24 0.145±0.00 N/A
ENSMUST00000136841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153091 N/A N/A N/A N/A N/A N/A N/A 0.142±0.00 0.139±0.13 0.340±0.00 0.064±0.00 0.834±0.45 0.065±0.00 N/A
ENSMUST00000157071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000087719 ENSMUST00000157094 1.304±0.00 0.961±0.54 0.178±0.00 0.415±0.08 0.883±0.60 0.724±0.42 0.372±0.09 0.248±0.03 0.362±0.24 0.591±0.17 N/A 0.991±0.39 0.435±0.19 0.329±0.13
ENSMUSG00000097008 ENSMUST00000181674 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.763±0.00 N/A N/A

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