C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: prolactin regulatory element binding
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045302 Preb 10090 - 5:30950853-30960330 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000074840 Preb-001 30950853-30960330 protein_coding
  ENSMUST00000088063 Preb-002 30955043-30960280 protein_coding
  ENSMUST00000123211 Preb-006 30958939-30960252 retained_intron
  ENSMUST00000125524 Preb-007 30958124-30959226 retained_intron
  ENSMUST00000125986 Preb-005 30958711-30960270 processed_transcript
  ENSMUST00000127081 Preb-003 30959361-30960262 processed_transcript
  ENSMUST00000128093 Preb-010 30955367-30958087 processed_transcript
  ENSMUST00000135863 Preb-009 30957976-30958662 retained_intron
  ENSMUST00000142816 Preb-004 30959055-30959555 processed_transcript
  ENSMUST00000148214 Preb-011 30950853-30959234 protein_coding
  ENSMUST00000155946 Preb-012 30955493-30956183 retained_intron
  ENSMUST00000156351 Preb-008 30955932-30958664 retained_intron

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074840ENSMUST00000088063ENSMUST00000123211ENSMUST00000128093ENSMUST00000148214ENSMUST00000156351
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074840 7.986±0.66 6.364±0.67 5.339±0.00 5.424±2.55 6.225±0.79 9.050±0.97 3.804±0.37 5.714±0.96 4.920±0.88 5.134±0.41 1.915±0.33 7.550±2.72 4.322±0.93 1.082±0.48
ENSMUST00000088063 30.324±1.91 34.155±3.38 25.424±3.41 17.347±5.67 25.234±5.16 33.903±2.85 14.764±2.49 40.351±5.25 32.133±7.72 22.991±1.13 14.243±1.37 32.285±8.16 31.423±6.23 8.339±3.11
ENSMUST00000123211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 19.198±0.00 N/A 3.625±0.00
ENSMUST00000128093 N/A N/A N/A N/A N/A N/A N/A N/A 33.686±4.99 N/A N/A N/A N/A N/A
ENSMUST00000148214 N/A N/A N/A 1.303±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 2.059±0.00 N/A
ENSMUST00000156351 45.420±1.44 84.255±13.83 29.833±5.45 17.353±0.00 46.169±13.10 82.816±19.16 21.746±2.60 51.378±8.85 50.712±24.48 41.132±0.00 11.477±1.35 67.595±26.40 27.944±6.23 13.713±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000054897 preb prolactin regulatory element binding protein_coding Danio_rerio
ENSG00000138073 PREB prolactin regulatory element binding protein_coding Homo_sapiens

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