C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: prolactin regulatory element binding
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000074840 Preb-001 ENSMUSG00000045302 10090 - 5:30950853-30960330 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000074840
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000074840 7.986±0.66 6.364±0.67 5.339±0.00 5.424±2.55 6.225±0.79 9.050±0.97 3.804±0.37 5.714±0.96 4.920±0.88 5.134±0.41 1.915±0.33 7.550±2.72 4.322±0.93 1.082±0.48

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 ISS sequence-specific DNA binding transcription factor activity
GO:0005634 IEA nucleus
GO:0005783 IEA endoplasmic reticulum
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0015031 IEA protein transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0016192 IEA vesicle-mediated transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000260643 PREB-001 protein_coding Homo_sapiens 0 1463
ENST00000316470 ABHD1-001 protein_coding Homo_sapiens 3e-39 167
ENST00000406567 PREB-003 protein_coding Homo_sapiens 0 839
ENST00000416802 PREB-011 processed_transcript Homo_sapiens 0 209
ENST00000420647 ABHD1-003 nonsense_mediated_decay Homo_sapiens 3e-39 167
ENST00000430533 PREB-010 protein_coding Homo_sapiens 0 335
ENST00000441451 PREB-008 nonsense_mediated_decay Homo_sapiens 0 412
ENST00000444452 PREB-002 nonsense_mediated_decay Homo_sapiens 0 1181
ENST00000448950 ABHD1-002 nonsense_mediated_decay Homo_sapiens 3e-39 167
ENST00000456259 PREB-009 protein_coding Homo_sapiens 0 582
ENST00000468045 PREB-005 retained_intron Homo_sapiens 0 741
ENST00000474802 PREB-007 retained_intron Homo_sapiens 0 444
ENST00000489120 ABHD1-005 retained_intron Homo_sapiens 4e-39 167
ENST00000591566 MEF2BNB-012 retained_intron Homo_sapiens 0.00000003 66
ENST00000621324 ABHD1-201 protein_coding Homo_sapiens 2e-39 167

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