C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformation/transcription domain-associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000100467 Trrap-001 ENSMUSG00000045482 10090 + 5:144768794-144859778 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000100467
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000100467 2.816±1.23 2.590±0.98 1.722±0.00 4.190±2.23 3.807±1.70 2.777±0.81 1.381±0.46 0.928±0.43 2.246±0.49 1.246±0.00 11.140±1.67 4.559±0.54 4.286±1.34

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TO CIL_0004TO_0002 CGP 5:144735915-144859778
CIL_0004TP CIL_0004TP_0002 CGP 5:144768092-144965847

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000123 TAS histone acetyltransferase complex
GO:0000812 IEA Swr1 complex
GO:0003712 IEA transcription cofactor activity
GO:0003713 IDA transcription coactivator activity
GO:0005634 IEA nucleus
GO:0005667 IDA transcription factor complex
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0007093 IMP mitotic cell cycle checkpoint
GO:0016578 IEA histone deubiquitination
GO:0016773 IEA phosphotransferase activity, alcohol group as acceptor
GO:0030914 IEA STAGA complex
GO:0033276 IEA transcription factor TFTC complex
GO:0035267 IEA NuA4 histone acetyltransferase complex
GO:0043967 IEA histone H4 acetylation
GO:0043968 IEA histone H2A acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000152394 trrap-001 protein_coding Danio_rerio 0 3325
ENSDART00000122245 trrap-201 protein_coding Danio_rerio 0 3000
ENST00000355540 TRRAP-002 protein_coding Homo_sapiens 0 11530
ENST00000359863 TRRAP-001 protein_coding Homo_sapiens 0 5312
ENST00000417523 TRRAP-005 protein_coding Homo_sapiens 0 307
ENST00000446306 TRRAP-004 protein_coding Homo_sapiens 0 13630
ENST00000456197 TRRAP-003 protein_coding Homo_sapiens 0 8410
ENST00000480695 TRRAP-006 retained_intron Homo_sapiens 0 689

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