C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: von Willebrand factor C domain-containing protein 2-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000045648 Vwc2l 10090 + 1:70725715-70885397 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000053922 Vwc2l-001 70725715-70885397 protein_coding
  ENSMUST00000159205 Vwc2l-003 70725752-70732202 retained_intron
  ENSMUST00000161937 Vwc2l-002 70725902-70885382 protein_coding
  ENSMUST00000162182 Vwc2l-004 70725923-70882489 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000053922ENSMUST00000159205ENSMUST00000161937ENSMUST00000162182
Transcript ID Adrenal Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000053922 N/A 0.882±0.20 N/A 0.030±0.00 0.018±0.00 N/A N/A 0.026±0.00
ENSMUST00000159205 0.060±0.01 0.259±0.00 0.044±0.00 0.038±0.00 N/A 0.072±0.00 N/A 0.003±0.00
ENSMUST00000161937 0.038±0.00 0.200±0.00 N/A 0.013±0.00 0.026±0.01 0.005±0.00 0.003±0.00 0.014±0.00
ENSMUST00000162182 N/A N/A N/A N/A N/A N/A N/A 0.019±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MG CIL_0005MG_0002 CGP 1:69826970-70885397
CIL_0000AI CIL_0000AI_0003 CGP 1:70725715-71103146

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005615 IDA extracellular space
GO:0030054 IEA cell junction
GO:0030514 IGI negative regulation of BMP signaling pathway
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0045202 IEA synapse
GO:0045666 IDA positive regulation of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069134 vwc2l von Willebrand factor C domain-containing protein 2-like protein_coding Danio_rerio
ENSG00000174453 VWC2L von Willebrand factor C domain containing protein 2-like protein_coding Homo_sapiens

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