C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: von Willebrand factor C domain-containing protein 2-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053922 Vwc2l-001 ENSMUSG00000045648 10090 + 1:70725715-70885397 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverTestisENSMUST00000053922
Transcript ID Brain Kidney Liver Testis
ENSMUST00000053922 0.882±0.20 0.030±0.00 0.018±0.00 0.026±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005MG CIL_0005MG_0002 CGP 1:69826970-70885397
CIL_0000AI CIL_0000AI_0003 CGP 1:70725715-71103146

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005615 IDA extracellular space
GO:0030054 IEA cell junction
GO:0030514 IGI negative regulation of BMP signaling pathway
GO:0032281 IDA alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex
GO:0045202 IEA synapse
GO:0045666 IDA positive regulation of neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000312504 VWC2L-001 protein_coding Homo_sapiens 0 2778
ENST00000340652 VWC2-001 protein_coding Homo_sapiens 0.00000000001 79
ENST00000427124 VWC2L-003 protein_coding Homo_sapiens 0 1616
ENST00000477752 VWC2L-002 retained_intron Homo_sapiens 0 1609

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