C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047230 Cldn2 10090 + X:139800828-139811386 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000054889 Cldn2-001 139800828-139811386 protein_coding
  ENSMUST00000135224 Cldn2-002 139806081-139809101 protein_coding
  ENSMUST00000172779 Cldn2-003 139802787-139808713 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054889ENSMUST00000135224
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054889 0.013±0.00 0.031±0.00 0.028±0.01 0.242±0.15 0.140±0.07 15.127±0.00 0.038±0.00 103.046±7.50 7.939±10.53 0.170±0.07 0.032±0.02 1.540±0.65 12.128±14.33 0.062±0.02
ENSMUST00000135224 0.308±0.27 0.114±0.00 N/A N/A 0.170±0.01 20.812±3.83 0.096±0.00 N/A N/A 0.379±0.19 0.047±0.00 3.045±1.07 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000174 CIL_000174_0003 CGP X:139779549-139811386

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005923 IDA tight junction
GO:0016021 IEA:NAS integral component of membrane
GO:0016338 IDA calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 IPI identical protein binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044387 cldn2 claudin 2 protein_coding Danio_rerio
ENSG00000165376 CLDN2 claudin 2 protein_coding Homo_sapiens

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