C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_000174_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054103-ENSDARG00000044387 CGP 7955 21:36930713-36972763
GeneTranscriptPositionBiotype
ENSDARG00000044387 (cldn2)
claudin 2
ENSDART00000065183 (cldn2-001) 36966135-36972763 protein_coding
ENSDARG00000054103 (ripply1)
ripply1
ENSDART00000076247 (ripply1-201) 36930714-36935668 protein_coding
ENSDART00000131490 (ripply1-003) 36933024-36935739 processed_transcript
ENSDART00000133405 (ripply1-001) 36930713-36937075 protein_coding
ENSDART00000136080 (ripply1-004) 36931296-36934411 retained_intron
ENSDART00000136569 (ripply1-002) 36933600-36936337 protein_coding
CIL_000174_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147223-ENSG00000165376 CGP 9606 X:106900063-106930861
GeneTranscriptPositionBiotype
ENSG00000147223 (RIPPLY1)
ripply transcriptional repressor 1
ENST00000276173 (RIPPLY1-002) 106900063-106903317 protein_coding
ENST00000411805 (RIPPLY1-001) 106900326-106903335 protein_coding
ENSG00000165376 (CLDN2)
claudin 2
ENST00000336803 (CLDN2-001) 106920404-106930861 protein_coding
ENST00000540876 (CLDN2-201) 106918360-106930859 protein_coding
ENST00000541806 (CLDN2-202) 106900164-106930859 protein_coding
CIL_000174_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000072945-ENSMUSG00000047230 CGP 10090 X:139779549-139811386
GeneTranscriptPositionBiotype
ENSMUSG00000047230 (Cldn2)
claudin 2
ENSMUST00000054889 (Cldn2-001) 139800828-139811386 protein_coding
ENSMUST00000135224 (Cldn2-002) 139806081-139809101 protein_coding
ENSMUST00000172779 (Cldn2-003) 139802787-139808713 protein_coding
ENSMUSG00000072945 (Ripply1)
ripply1 homolog (zebrafish)
ENSMUST00000101217 (Ripply1-001) 139779549-139782353 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000174_0001ENSDARG00000044387ENSDART00000065183ENSDARG00000054103ENSDART00000076247ENSDART00000131490ENSDART00000133405ENSDART00000136080ENSDART00000136569CIL_000174_0002ENSG00000147223ENST00000276173ENST00000411805ENSG00000165376ENST00000336803ENST00000540876ENST00000541806CIL_000174_0003ENSMUSG00000047230ENSMUST00000054889ENSMUST00000135224ENSMUST00000172779ENSMUSG00000072945ENSMUST00000101217
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000174_0001ENSDARG00000044387ENSDART00000065183ENSDARG00000054103ENSDART00000076247ENSDART00000131490ENSDART00000133405CIL_000174_0002ENSG00000147223ENST00000276173ENST00000411805ENSG00000165376ENST00000336803ENST00000540876ENST00000541806CIL_000174_0003ENSMUSG00000047230ENSMUST00000054889ENSMUST00000135224ENSMUSG00000072945ENSMUST00000101217
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000044387 ENSDART00000065183 N/A N/A N/A 0.285±0.12 N/A N/A 0.648±0.48 5.842±2.50 3.833±0.00 N/A 0.287±0.00 N/A N/A N/A
ENSDARG00000054103 ENSDART00000076247 N/A N/A N/A 1.646±0.33 N/A N/A 2.611±2.11 0.623±0.24 0.124±0.00 N/A 0.179±0.00 N/A N/A N/A
ENSDART00000131490 N/A N/A N/A 1.224±0.33 N/A N/A 0.698±0.18 0.633±0.00 0.093±0.00 N/A N/A N/A N/A N/A
ENSDART00000133405 N/A N/A N/A 0.830±0.00 N/A N/A 0.611±0.00 0.165±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000136080 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000136569 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000147223 ENST00000276173 N/A N/A N/A N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A N/A 0.047±0.00 0.097±0.00
ENST00000411805 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.620±0.00 0.125±0.00 N/A 0.061±0.02 0.234±0.00
ENSG00000165376 ENST00000336803 N/A 0.042±0.00 N/A 0.303±0.04 0.348±0.22 N/A N/A 1.856±0.00 1.124±0.71 N/A 0.002±0.00 0.253±0.17 N/A N/A
ENST00000540876 0.175±0.00 0.088±0.00 9.900±0.00 N/A N/A 0.016±0.00 0.022±0.00 40.203±0.00 8.878±0.00 0.119±0.00 0.015±0.00 0.254±0.00 0.017±0.00 1.615±0.00
ENST00000541806 N/A N/A N/A N/A 0.163±0.00 N/A N/A 1.218±0.00 2.768±0.00 N/A N/A 0.267±0.00 0.077±0.00 0.069±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000047230 ENSMUST00000054889 0.013±0.00 0.031±0.00 0.028±0.01 0.242±0.15 0.140±0.07 15.127±0.00 0.038±0.00 103.046±7.50 7.939±10.53 0.170±0.07 0.032±0.02 1.540±0.65 12.128±14.33 0.062±0.02
ENSMUST00000135224 0.308±0.27 0.114±0.00 N/A N/A 0.170±0.01 20.812±3.83 0.096±0.00 N/A N/A 0.379±0.19 0.047±0.00 3.045±1.07 N/A N/A
ENSMUST00000172779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000072945 ENSMUST00000101217 0.054±0.01 N/A N/A 0.105±0.05 N/A 0.410±0.18 N/A 0.093±0.04 0.702±0.64 0.108±0.05 0.088±0.05 0.177±0.16 22.701±23.38 N/A

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