C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: claudin 2
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000165376 CLDN2 9606 + X:106900164-106930861 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000336803 CLDN2-001 106920404-106930861 protein_coding
  ENST00000540876 CLDN2-201 106918360-106930859 protein_coding
  ENST00000541806 CLDN2-202 106900164-106930859 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336803ENST00000540876ENST00000541806
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336803 N/A 0.042±0.00 N/A 0.303±0.04 0.348±0.22 N/A N/A 1.856±0.00 1.124±0.71 N/A 0.002±0.00 0.253±0.17 N/A N/A
ENST00000540876 0.175±0.00 0.088±0.00 9.900±0.00 N/A N/A 0.016±0.00 0.022±0.00 40.203±0.00 8.878±0.00 0.119±0.00 0.015±0.00 0.254±0.00 0.017±0.00 1.615±0.00
ENST00000541806 N/A N/A N/A N/A 0.163±0.00 N/A N/A 1.218±0.00 2.768±0.00 N/A N/A 0.267±0.00 0.077±0.00 0.069±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000174 CIL_000174_0002 CGP X:106900063-106930861
CIL_000173 CIL_000173_0002 CGP X:106900164-107118823

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005886 IEA plasma membrane
GO:0005923 ISS tight junction
GO:0016021 IEA integral component of membrane
GO:0016338 ISS calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 ISS identical protein binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000044387 cldn2 claudin 2 protein_coding Danio_rerio
ENSMUSG00000047230 Cldn2 claudin 2 protein_coding Mus_musculus

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