C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: claudin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054889 Cldn2-001 ENSMUSG00000047230 10090 + X:139800828-139811386 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000054889
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000054889 0.013±0.00 0.031±0.00 0.028±0.01 0.242±0.15 0.140±0.07 15.127±0.00 0.038±0.00 103.046±7.50 7.939±10.53 0.170±0.07 0.032±0.02 1.540±0.65 12.128±14.33 0.062±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000174 CIL_000174_0003 CGP X:139779549-139811386

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005886 IEA plasma membrane
GO:0005923 IDA tight junction
GO:0016021 IEA:NAS integral component of membrane
GO:0016338 IDA calcium-independent cell-cell adhesion via plasma membrane cell-adhesion molecules
GO:0042802 IPI identical protein binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336803 CLDN2-001 protein_coding Homo_sapiens 0 1094
ENST00000540876 CLDN2-201 protein_coding Homo_sapiens 0 1061
ENST00000541806 CLDN2-202 protein_coding Homo_sapiens 0 1061

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