C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: REX1, RNA exonuclease 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047417 Rexo1 10090 - 10:80540922-80561560 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000057910 Rexo1-001 80540925-80561560 protein_coding
  ENSMUST00000182260 Rexo1-007 80541664-80547921 protein_coding
  ENSMUST00000182604 Rexo1-002 80542273-80546802 retained_intron
  ENSMUST00000182682 Rexo1-004 80540922-80545836 retained_intron
  ENSMUST00000183073 Rexo1-005 80545997-80549462 nonsense_mediated_decay
  ENSMUST00000183139 Rexo1-006 80547327-80549460 processed_transcript
  ENSMUST00000183160 Rexo1-008 80542616-80544313 nonsense_mediated_decay
  ENSMUST00000183233 Rexo1-003 80542273-80546470 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057910ENSMUST00000182260ENSMUST00000182604ENSMUST00000183233
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057910 4.969±2.43 7.098±4.93 4.181±0.26 8.539±4.27 5.740±3.46 5.694±2.83 1.304±0.33 2.196±0.37 4.973±2.79 6.930±1.29 1.055±0.13 6.789±2.67 5.321±1.76 6.613±0.44
ENSMUST00000182260 7.644±1.31 16.483±2.54 4.196±0.00 11.028±1.28 13.632±5.92 7.813±2.49 3.426±0.89 7.584±1.72 6.069±1.31 11.405±2.47 1.604±0.46 21.281±7.38 6.740±3.81 N/A
ENSMUST00000182604 N/A 8.701±0.85 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.005±17.62
ENSMUST00000183233 N/A N/A 3.962±0.00 10.845±0.00 3.968±0.00 N/A 2.919±0.00 N/A 6.684±0.72 N/A N/A 10.210±2.05 10.329±4.09 22.784±2.42

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000187 CIL_000187_0002 CGP 10:80519585-80561560
CIL_00047J CIL_00047J_0002 CGP 10:80540922-80577321

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026986 rexo1 REX1, RNA exonuclease 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSG00000079313 REXO1 REX1, RNA exonuclease 1 homolog (S. cerevisiae) protein_coding Homo_sapiens

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