C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: REX1, RNA exonuclease 1 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057910 Rexo1-001 ENSMUSG00000047417 10090 - 10:80540925-80561560 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057910 4.969±2.43 7.098±4.93 4.181±0.26 8.539±4.27 5.740±3.46 5.694±2.83 1.304±0.33 2.196±0.37 4.973±2.79 6.930±1.29 1.055±0.13 6.789±2.67 5.321±1.76 6.613±0.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000187 CIL_000187_0002 CGP 10:80519585-80561560
CIL_00047J CIL_00047J_0002 CGP 10:80540922-80577321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000170168 REXO1-001 protein_coding Homo_sapiens 0 2036
ENST00000586291 REXO1-006 retained_intron Homo_sapiens 0 226
ENST00000586343 REXO1-003 nonsense_mediated_decay Homo_sapiens 0 470
ENST00000587524 REXO1-002 processed_transcript Homo_sapiens 0 377
ENST00000590936 REXO1-004 nonsense_mediated_decay Homo_sapiens 0 627

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