C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000187_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000130270-ENSG00000079313 CGP 9606 19:1782075-1848463
GeneTranscriptPositionBiotype
ENSG00000079313 (REXO1)
REX1, RNA exonuclease 1 homolog (S. cerevisiae) 		ENST00000170168 (REXO1-001) 1815246-1848463 protein_coding
ENST00000586291 (REXO1-006) 1816094-1816765 retained_intron
ENST00000586343 (REXO1-003) 1818558-1821567 nonsense_mediated_decay
ENST00000587404 (REXO1-007) 1816039-1816387 retained_intron
ENST00000587524 (REXO1-002) 1827648-1848446 processed_transcript
ENST00000588743 (REXO1-005) 1817179-1818735 protein_coding
ENST00000590936 (REXO1-004) 1815970-1819963 nonsense_mediated_decay
ENSG00000130270 (ATP8B3)
ATPase, aminophospholipid transporter, class I, type 8B, member 3 		ENST00000310127 (ATP8B3-002) 1782075-1812276 protein_coding
ENST00000525591 (ATP8B3-005) 1783028-1812200 protein_coding
ENST00000526092 (ATP8B3-001) 1798761-1812276 protein_coding
ENST00000526847 (ATP8B3-008) 1785558-1790817 nonsense_mediated_decay
ENST00000531925 (ATP8B3-003) 1782077-1812276 nonsense_mediated_decay
ENST00000533107 (ATP8B3-007) 1798764-1806160 retained_intron
ENST00000533993 (ATP8B3-004) 1805190-1811624 protein_coding
ENST00000587160 (ATP8B3-009) 1807168-1812237 protein_coding
ENSG00000267007 (CTB-31O20.3)
 ENST00000586259 (CTB-31O20.3-001) 1815249-1815873 antisense
CIL_000187_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003341-ENSMUSG00000047417 CGP 10090 10:80519585-80561560
GeneTranscriptPositionBiotype
ENSMUSG00000003341 (Atp8b3)
ATPase, class I, type 8B, member 3 		ENSMUST00000020383 (Atp8b3-201) 80519585-80539124 protein_coding
ENSMUSG00000047417 (Rexo1)
REX1, RNA exonuclease 1 homolog (S. cerevisiae) 		ENSMUST00000057910 (Rexo1-001) 80540925-80561560 protein_coding
ENSMUST00000182260 (Rexo1-007) 80541664-80547921 protein_coding
ENSMUST00000182604 (Rexo1-002) 80542273-80546802 retained_intron
ENSMUST00000182682 (Rexo1-004) 80540922-80545836 retained_intron
ENSMUST00000183073 (Rexo1-005) 80545997-80549462 nonsense_mediated_decay
ENSMUST00000183139 (Rexo1-006) 80547327-80549460 processed_transcript
ENSMUST00000183160 (Rexo1-008) 80542616-80544313 nonsense_mediated_decay
ENSMUST00000183233 (Rexo1-003) 80542273-80546470 retained_intron

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000187_0001ENSG00000079313ENST00000170168ENST00000586291ENST00000586343ENST00000587404ENST00000587524ENST00000588743ENST00000590936ENSG00000130270ENST00000310127ENST00000525591ENST00000526092ENST00000526847ENST00000531925ENST00000533107ENST00000533993ENST00000587160ENSG00000267007ENST00000586259CIL_000187_0002ENSMUSG00000003341ENSMUST00000020383ENSMUSG00000047417ENSMUST00000057910ENSMUST00000182260ENSMUST00000182604ENSMUST00000182682ENSMUST00000183073ENSMUST00000183139ENSMUST00000183160ENSMUST00000183233
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000187_0001ENSG00000079313ENST00000170168ENST00000586291ENST00000587524ENST00000588743ENST00000590936ENSG00000130270ENST00000310127ENST00000525591ENST00000526092ENST00000526847ENST00000531925ENST00000533107ENST00000533993ENSG00000267007ENST00000586259CIL_000187_0002ENSMUSG00000003341ENSMUST00000020383ENSMUSG00000047417ENSMUST00000057910ENSMUST00000182260ENSMUST00000182604ENSMUST00000183233
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000079313 ENST00000170168 5.274±0.00 9.834±0.00 N/A 6.583±0.00 5.145±0.00 2.940±0.00 3.754±0.00 2.267±1.87 1.552±0.95 2.989±2.14 2.347±2.30 7.681±3.41 9.817±4.62 14.958±2.36
ENST00000586291 N/A N/A N/A N/A N/A N/A N/A 1.401±0.00 N/A N/A 1.195±0.00 N/A N/A N/A
ENST00000586343 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587404 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000587524 N/A N/A N/A N/A 1.198±0.00 N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A
ENST00000588743 N/A N/A N/A N/A N/A N/A N/A N/A 1.758±0.00 N/A N/A N/A N/A N/A
ENST00000590936 7.548±0.00 19.794±0.00 N/A 7.198±5.74 5.676±4.58 3.899±2.89 2.550±0.00 8.134±0.00 3.374±0.00 5.039±0.00 N/A 15.000±3.27 9.038±0.00 42.690±5.73
ENSG00000130270 ENST00000310127 N/A N/A N/A 0.030±0.00 N/A 0.038±0.00 N/A 0.079±0.00 N/A N/A 0.016±0.00 0.208±0.00 0.056±0.00 9.497±7.16
ENST00000525591 N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000526092 N/A N/A N/A N/A N/A N/A N/A N/A 0.178±0.00 N/A N/A N/A N/A N/A
ENST00000526847 N/A N/A N/A 0.476±0.00 N/A N/A 0.162±0.00 N/A N/A N/A N/A 0.936±0.00 N/A N/A
ENST00000531925 0.066±0.00 N/A N/A N/A 0.018±0.00 0.022±0.00 N/A N/A N/A N/A N/A N/A 0.165±0.00 1.452±0.00
ENST00000533107 0.607±0.00 0.464±0.00 N/A 0.342±0.00 0.827±0.00 0.304±0.16 0.185±0.00 0.446±0.00 0.280±0.00 0.415±0.38 0.063±0.00 0.395±0.09 0.125±0.06 N/A
ENST00000533993 0.352±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.047±0.00 0.148±0.00 0.111±0.00 N/A
ENST00000587160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000267007 ENST00000586259 N/A 39.464±0.00 N/A N/A 20.289±0.00 16.439±0.00 N/A 18.439±0.00 8.416±0.00 18.537±0.00 2.277±0.00 N/A 26.760±0.00 59.785±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003341 ENSMUST00000020383 0.013±0.01 0.113±0.06 0.007±0.00 0.218±0.00 0.031±0.01 0.011±0.00 0.163±0.02 0.123±0.05 0.014±0.01 0.045±0.01 N/A 0.097±0.04 0.208±0.10 437.305±50.54
ENSMUSG00000047417 ENSMUST00000057910 4.969±2.43 7.098±4.93 4.181±0.26 8.539±4.27 5.740±3.46 5.694±2.83 1.304±0.33 2.196±0.37 4.973±2.79 6.930±1.29 1.055±0.13 6.789±2.67 5.321±1.76 6.613±0.44
ENSMUST00000182260 7.644±1.31 16.483±2.54 4.196±0.00 11.028±1.28 13.632±5.92 7.813±2.49 3.426±0.89 7.584±1.72 6.069±1.31 11.405±2.47 1.604±0.46 21.281±7.38 6.740±3.81 N/A
ENSMUST00000182604 N/A 8.701±0.85 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.005±17.62
ENSMUST00000182682 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183073 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183160 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183233 N/A N/A 3.962±0.00 10.845±0.00 3.968±0.00 N/A 2.919±0.00 N/A 6.684±0.72 N/A N/A 10.210±2.05 10.329±4.09 22.784±2.42

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