C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: REX1, RNA exonuclease 1 homolog (S. cerevisiae)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000079313 REXO1 9606 - 19:1815246-1848463 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000170168 REXO1-001 1815246-1848463 protein_coding
  ENST00000586291 REXO1-006 1816094-1816765 retained_intron
  ENST00000586343 REXO1-003 1818558-1821567 nonsense_mediated_decay
  ENST00000587404 REXO1-007 1816039-1816387 retained_intron
  ENST00000587524 REXO1-002 1827648-1848446 processed_transcript
  ENST00000588743 REXO1-005 1817179-1818735 protein_coding
  ENST00000590936 REXO1-004 1815970-1819963 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000170168ENST00000586291ENST00000587524ENST00000588743ENST00000590936
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000170168 5.274±0.00 9.834±0.00 6.583±0.00 5.145±0.00 2.940±0.00 3.754±0.00 2.267±1.87 1.552±0.95 2.989±2.14 2.347±2.30 7.681±3.41 9.817±4.62 14.958±2.36
ENST00000586291 N/A N/A N/A N/A N/A N/A 1.401±0.00 N/A N/A 1.195±0.00 N/A N/A N/A
ENST00000587524 N/A N/A N/A 1.198±0.00 N/A N/A N/A N/A N/A 0.198±0.00 N/A N/A N/A
ENST00000588743 N/A N/A N/A N/A N/A N/A N/A 1.758±0.00 N/A N/A N/A N/A N/A
ENST00000590936 7.548±0.00 19.794±0.00 7.198±5.74 5.676±4.58 3.899±2.89 2.550±0.00 8.134±0.00 3.374±0.00 5.039±0.00 N/A 15.000±3.27 9.038±0.00 42.690±5.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000187 CIL_000187_0001 CGP 19:1782075-1848463
CIL_00047J CIL_00047J_0001 CGP 19:1815246-1863568

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0004527 IEA exonuclease activity
GO:0005634 IDA nucleus
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000026986 rexo1 REX1, RNA exonuclease 1 homolog (S. cerevisiae) protein_coding Danio_rerio
ENSMUSG00000047417 Rexo1 REX1, RNA exonuclease 1 homolog (S. cerevisiae) protein_coding Mus_musculus
ENSMUSG00000094635 Gm7104 predicted gene 7104 protein_coding Mus_musculus

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