C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gephyrin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047454 Gphn 10090 + 12:78226655-78684767 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000052472 Gphn-201 78226655-78684767 protein_coding
  ENSMUST00000110388 Gphn-202 78226655-78684767 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052472ENSMUST00000110388
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052472 N/A N/A N/A 6.888±0.35 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110388 10.068±0.37 7.952±0.93 7.487±0.38 7.241±0.40 9.028±3.69 3.966±0.35 5.361±0.79 16.245±0.71 8.156±5.24 5.318±0.84 9.213±1.09 6.646±1.58 2.029±0.49 3.796±1.70

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KA CIL_0001KA_0003 CGP 12:77238104-78684767
CIL_00010J CIL_00010J_0002 CGP 12:78226655-78734513

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006777 IMP Mo-molybdopterin cofactor biosynthetic process
GO:0007529 IMP establishment of synaptic specificity at neuromuscular junction
GO:0008092 TAS cytoskeletal protein binding
GO:0019897 TAS extrinsic component of plasma membrane
GO:0030054 IEA cell junction
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0060077 IDA inhibitory synapse
GO:0061598 IEA molybdopterin adenylyltransferase activity
GO:0061599 IEA molybdopterin molybdotransferase activity
GO:0072579 IMP glycine receptor clustering

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061586 gphnb gephyrin b protein_coding Danio_rerio
ENSG00000171723 GPHN gephyrin protein_coding Homo_sapiens

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