C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: gephyrin
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000171723 GPHN 9606 + 14:66507407-67181803 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000315266 GPHN-003 66507407-67181798 protein_coding
  ENST00000459628 GPHN-004 66508138-67059029 protein_coding
  ENST00000478722 GPHN-006 66507407-67181803 protein_coding
  ENST00000543237 GPHN-007 66508504-67181023 protein_coding
  ENST00000544752 GPHN-008 66823095-67181093 processed_transcript
  ENST00000553936 GPHN-010 66508516-66916034 nonsense_mediated_decay
  ENST00000555456 GPHN-014 66824474-67058726 protein_coding
  ENST00000555503 GPHN-017 67113070-67169136 protein_coding
  ENST00000555527 GPHN-016 67111915-67168991 processed_transcript
  ENST00000555668 GPHN-011 66508507-66880032 nonsense_mediated_decay
  ENST00000556020 GPHN-009 66509059-66824554 processed_transcript
  ENST00000556240 GPHN-019 67180849-67181792 protein_coding
  ENST00000556501 GPHN-015 67058649-67110287 retained_intron
  ENST00000556633 GPHN-013 66508507-66922758 nonsense_mediated_decay
  ENST00000557654 GPHN-012 66508516-66880033 nonsense_mediated_decay
  ENST00000557678 GPHN-018 67143001-67165230 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315266ENST00000459628ENST00000478722ENST00000543237ENST00000544752ENST00000555527ENST00000556240ENST00000556633ENST00000557654
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315266 N/A 1.261±0.00 5.052±0.00 N/A N/A 0.602±0.00 4.436±0.00 0.652±0.00 N/A N/A N/A N/A N/A
ENST00000459628 N/A 3.237±0.00 N/A N/A 1.178±0.00 1.341±0.00 N/A N/A 1.340±0.00 N/A 0.374±0.00 N/A N/A
ENST00000478722 2.234±0.00 N/A N/A 2.298±0.00 1.718±0.00 2.357±0.00 3.148±0.00 1.894±0.00 1.875±0.00 2.930±2.36 1.675±1.09 1.222±0.27 1.738±0.86
ENST00000543237 N/A N/A 4.968±0.92 1.712±0.34 N/A 0.489±0.00 N/A N/A N/A N/A 0.271±0.00 N/A N/A
ENST00000544752 0.658±0.00 N/A N/A N/A N/A N/A N/A N/A 0.810±0.00 N/A 0.269±0.00 0.787±0.13 1.483±0.00
ENST00000555527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.059±0.00 2.354±0.00 N/A
ENST00000556240 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.481±0.00 N/A N/A N/A
ENST00000556633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.039±0.00 N/A N/A
ENST00000557654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.165±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KA CIL_0001KA_0002 CGP 14:65410592-67181803
CIL_00010J CIL_00010J_0001 CGP 14:66507407-67228550

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005622 IEA intracellular
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005886 TAS plasma membrane
GO:0006766 TAS vitamin metabolic process
GO:0006767 TAS water-soluble vitamin metabolic process
GO:0006777 IEA Mo-molybdopterin cofactor biosynthetic process
GO:0007529 IEA establishment of synaptic specificity at neuromuscular junction
GO:0016740 TAS transferase activity
GO:0030054 IEA cell junction
GO:0032324 TAS:IEA molybdopterin cofactor biosynthetic process
GO:0044281 TAS small molecule metabolic process
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0060077 IEA inhibitory synapse
GO:0061598 IEA molybdopterin adenylyltransferase activity
GO:0061599 IEA molybdopterin molybdotransferase activity
GO:0072579 IEA glycine receptor clustering

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000061586 gphnb gephyrin b protein_coding Danio_rerio
ENSMUSG00000047454 Gphn gephyrin protein_coding Mus_musculus

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