C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: gephyrin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052472 Gphn-201 ENSMUSG00000047454 10090 + 12:78226655-78684767 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainENSMUST00000052472
Transcript ID Brain
ENSMUST00000052472 6.888±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001KA CIL_0001KA_0003 CGP 12:77238104-78684767
CIL_00010J CIL_00010J_0002 CGP 12:78226655-78734513

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005622 IDA intracellular
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0006777 IMP Mo-molybdopterin cofactor biosynthetic process
GO:0007529 IMP establishment of synaptic specificity at neuromuscular junction
GO:0008092 TAS cytoskeletal protein binding
GO:0019897 TAS extrinsic component of plasma membrane
GO:0030054 IEA cell junction
GO:0045211 IEA postsynaptic membrane
GO:0046872 IEA metal ion binding
GO:0060077 IDA inhibitory synapse
GO:0061598 IEA molybdopterin adenylyltransferase activity
GO:0061599 IEA molybdopterin molybdotransferase activity
GO:0072579 IMP glycine receptor clustering

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000087952 gphnb-201 protein_coding Danio_rerio 0 878
ENSDART00000133078 gphnb-001 protein_coding Danio_rerio 0 878
ENSDART00000153942 gphna-002 protein_coding Danio_rerio 0 488
ENSDART00000157289 gphna-003 retained_intron Danio_rerio 0 324
ENST00000315266 GPHN-003 protein_coding Homo_sapiens 0 3269
ENST00000459628 GPHN-004 protein_coding Homo_sapiens 0 636
ENST00000478722 GPHN-006 protein_coding Homo_sapiens 0 3269
ENST00000543237 GPHN-007 protein_coding Homo_sapiens 0 3247
ENST00000544752 GPHN-008 processed_transcript Homo_sapiens 0 2316
ENST00000553936 GPHN-010 nonsense_mediated_decay Homo_sapiens 0 538
ENST00000555456 GPHN-014 protein_coding Homo_sapiens 0 1105
ENST00000555503 GPHN-017 protein_coding Homo_sapiens 0 837
ENST00000555527 GPHN-016 processed_transcript Homo_sapiens 0 544
ENST00000555668 GPHN-011 nonsense_mediated_decay Homo_sapiens 0 267
ENST00000556020 GPHN-009 processed_transcript Homo_sapiens 0 344
ENST00000556240 GPHN-019 protein_coding Homo_sapiens 0 436
ENST00000556501 GPHN-015 retained_intron Homo_sapiens 0 643
ENST00000556633 GPHN-013 nonsense_mediated_decay Homo_sapiens 0 527
ENST00000557654 GPHN-012 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000557678 GPHN-018 retained_intron Homo_sapiens 0 372
ENST00000604500 RP11-1012A1.10-001 processed_pseudogene Homo_sapiens 0 195

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