C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001KA_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000088117-ENSDARG00000061586 CGP 7955 20:50966943-51334115
GeneTranscriptPositionBiotype
ENSDARG00000061586 (gphnb)
gephyrin b 		ENSDART00000087952 (gphnb-201) 51184204-51334114 protein_coding
ENSDART00000133078 (gphnb-001) 51291080-51334115 protein_coding
ENSDARG00000088117 (FUT8 (2 of 2))
fucosyltransferase 8 (alpha (1,6) fucosyltransferase) 		ENSDART00000123851 (FUT8 (2 of 2)-201) 50966943-51057204 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001KA_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000033170-ENSG00000171723 CGP 9606 14:65410592-67181803
GeneTranscriptPositionBiotype
ENSG00000033170 (FUT8)
fucosyltransferase 8 (alpha (1,6) fucosyltransferase) 		ENST00000342677 (FUT8-005) 65411865-65743142 nonsense_mediated_decay
ENST00000358307 (FUT8-002) 65413008-65743142 protein_coding
ENST00000360689 (FUT8-001) 65410592-65744121 protein_coding
ENST00000394586 (FUT8-003) 65411122-65743142 protein_coding
ENST00000549235 (FUT8-008) 65411891-65458188 processed_transcript
ENST00000553924 (FUT8-013) 65413006-65561610 protein_coding
ENST00000554610 (FUT8-007) 65413022-65561697 protein_coding
ENST00000554667 (FUT8-012) 65488318-65561702 protein_coding
ENST00000554765 (FUT8-014) 65636517-65721858 processed_transcript
ENST00000555559 (FUT8-010) 65411936-65561685 protein_coding
ENST00000556292 (FUT8-009) 65413069-65458188 processed_transcript
ENST00000556518 (FUT8-006) 65411863-65561652 protein_coding
ENST00000557164 (FUT8-004) 65411874-65742936 protein_coding
ENST00000557338 (FUT8-011) 65413019-65561715 protein_coding
ENST00000557536 (FUT8-015) 65636516-65721912 processed_transcript
ENSG00000171723 (GPHN)
gephyrin 		ENST00000315266 (GPHN-003) 66507407-67181798 protein_coding
ENST00000459628 (GPHN-004) 66508138-67059029 protein_coding
ENST00000478722 (GPHN-006) 66507407-67181803 protein_coding
ENST00000543237 (GPHN-007) 66508504-67181023 protein_coding
ENST00000544752 (GPHN-008) 66823095-67181093 processed_transcript
ENST00000553936 (GPHN-010) 66508516-66916034 nonsense_mediated_decay
ENST00000555456 (GPHN-014) 66824474-67058726 protein_coding
ENST00000555503 (GPHN-017) 67113070-67169136 protein_coding
ENST00000555527 (GPHN-016) 67111915-67168991 processed_transcript
ENST00000555668 (GPHN-011) 66508507-66880032 nonsense_mediated_decay
ENST00000556020 (GPHN-009) 66509059-66824554 processed_transcript
ENST00000556240 (GPHN-019) 67180849-67181792 protein_coding
ENST00000556501 (GPHN-015) 67058649-67110287 retained_intron
ENST00000556633 (GPHN-013) 66508507-66922758 nonsense_mediated_decay
ENST00000557654 (GPHN-012) 66508516-66880033 nonsense_mediated_decay
ENST00000557678 (GPHN-018) 67143001-67165230 retained_intron
ENSG00000180662 (RPL21P8)
ribosomal protein L21 pseudogene 8 		ENST00000465083 (RPL21P8-001) 65467807-65468341 processed_pseudogene
ENSG00000196553 (LINC00238)
long intergenic non-protein coding RNA 238 		ENST00000359454 (LINC00238-001) 66486371-66498553 lincRNA
ENST00000389594 (LINC00238-006) 66486354-66498552 lincRNA
ENST00000411796 (LINC00238-005) 66486391-66498552 lincRNA
ENST00000432289 (LINC00238-002) 66486667-66498553 lincRNA
ENST00000436570 (LINC00238-003) 66496683-66498553 retained_intron
ENST00000450299 (LINC00238-004) 66486407-66498400 lincRNA
ENSG00000224861 (YBX1P1)
Y box binding protein 1 pseudogene 1 		ENST00000445822 (YBX1P1-001) 66012830-66013789 processed_pseudogene
ENSG00000258490 (RP11-862P13.1)
 ENST00000555850 (RP11-862P13.1-001) 66969038-66969816 antisense
ENSG00000258502 (RP11-783L4.1)
 ENST00000554187 (RP11-783L4.1-001) 66111581-66123706 lincRNA
ENST00000556291 (RP11-783L4.1-003) 66111631-66123759 lincRNA
ENST00000556662 (RP11-783L4.1-005) 66111631-66123193 lincRNA
ENST00000557050 (RP11-783L4.1-002) 66111635-66123199 lincRNA
ENST00000557723 (RP11-783L4.1-004) 66111631-66125847 lincRNA
ENSG00000258629 (CTD-2014B16.1)
 ENST00000555712 (CTD-2014B16.1-001) 65879592-65881070 processed_pseudogene
ENSG00000258796 (CTD-2560C21.1)
 ENST00000556832 (CTD-2560C21.1-001) 66760532-66761018 processed_pseudogene
ENSG00000258847 (CTD-2014B16.3)
 ENST00000554907 (CTD-2014B16.3-001) 65957297-66004523 lincRNA
ENSG00000258960 (CTD-2014B16.2)
 ENST00000557194 (CTD-2014B16.2-001) 65900932-65901451 processed_pseudogene
ENSG00000258980 (EIF1AXP2)
eukaryotic translation initiation factor 1A, X-linked pseudogene 2 		ENST00000555940 (EIF1AXP2-001) 65528830-65529574 processed_pseudogene
ENSG00000277651 (CTD-2014B16.5)
 ENST00000616012 (CTD-2014B16.5-001) 65986967-65987447 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0001KA_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000021065-ENSMUSG00000047454 CGP 10090 12:77238104-78684767
GeneTranscriptPositionBiotype
ENSMUSG00000021065 (Fut8)
fucosyltransferase 8 		ENSMUST00000062804 (Fut8-201) 77239065-77476338 protein_coding
ENSMUST00000171770 (Fut8-202) 77238104-77475996 protein_coding
ENSMUST00000177595 (Fut8-203) 77238104-77475996 protein_coding
ENSMUSG00000047454 (Gphn)
gephyrin 		ENSMUST00000052472 (Gphn-201) 78226655-78684767 protein_coding
ENSMUST00000110388 (Gphn-202) 78226655-78684767 protein_coding
ENSMUSG00000064833 (Gm25926)
predicted gene, 25926 		ENSMUST00000082899 (Gm25926-201) 77418417-77418576 snRNA
ENSMUSG00000099418 (RP24-454N4.1)
predicted gene 6657 		ENSMUST00000185497 (RP24-454N4.1-003) 78200966-78209029 lincRNA
ENSMUST00000187283 (RP24-454N4.1-002) 78198663-78201045 lincRNA
ENSMUST00000188791 (RP24-454N4.1-001) 78197174-78208930 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KA_0001ENSDARG00000061586ENSDART00000087952ENSDART00000133078ENSDARG00000088117ENSDART00000123851CIL_0001KA_0002ENSG00000033170ENST00000342677ENST00000358307ENST00000360689ENST00000394586ENST00000549235ENST00000553924ENST00000554610ENST00000554667ENST00000554765ENST00000555559ENST00000556292ENST00000556518ENST00000557164ENST00000557338ENST00000557536ENSG00000171723ENST00000315266ENST00000459628ENST00000478722ENST00000543237ENST00000544752ENST00000553936ENST00000555456ENST00000555503ENST00000555527ENST00000555668ENST00000556020ENST00000556240ENST00000556501ENST00000556633ENST00000557654ENST00000557678ENSG00000180662ENST00000465083ENSG00000196553ENST00000359454ENST00000389594ENST00000411796ENST00000432289ENST00000436570ENST00000450299ENSG00000224861ENST00000445822ENSG00000258490ENST00000555850ENSG00000258502ENST00000554187ENST00000556291ENST00000556662ENST00000557050ENST00000557723ENSG00000258629ENST00000555712ENSG00000258796ENST00000556832ENSG00000258847ENST00000554907ENSG00000258960ENST00000557194ENSG00000258980ENST00000555940ENSG00000277651ENST00000616012CIL_0001KA_0003ENSMUSG00000021065ENSMUST00000062804ENSMUST00000171770ENSMUST00000177595ENSMUSG00000047454ENSMUST00000052472ENSMUST00000110388ENSMUSG00000064833ENSMUST00000082899ENSMUSG00000099418ENSMUST00000185497ENSMUST00000187283ENSMUST00000188791
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001KA_0001ENSDARG00000061586ENSDART00000087952ENSDART00000133078ENSDARG00000088117ENSDART00000123851CIL_0001KA_0002ENSG00000033170ENST00000342677ENST00000358307ENST00000360689ENST00000394586ENST00000557164ENSG00000171723ENST00000315266ENST00000459628ENST00000478722ENST00000543237ENST00000544752ENST00000555527ENST00000556240ENST00000556633ENST00000557654ENSG00000180662ENST00000465083ENSG00000196553ENST00000359454ENST00000389594ENST00000411796ENST00000436570ENST00000450299ENSG00000224861ENST00000445822ENSG00000258490ENST00000555850ENSG00000258502ENST00000554187ENST00000557050ENSG00000258629ENST00000555712ENSG00000258796ENST00000556832ENSG00000258847ENST00000554907ENSG00000258960ENST00000557194ENSG00000258980ENST00000555940ENSG00000277651ENST00000616012CIL_0001KA_0003ENSMUSG00000021065ENSMUST00000062804ENSMUST00000171770ENSMUSG00000047454ENSMUST00000052472ENSMUST00000110388ENSMUSG00000064833ENSMUST00000082899ENSMUSG00000099418ENSMUST00000185497ENSMUST00000188791
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000061586 ENSDART00000087952 N/A N/A N/A 6.144±0.93 N/A N/A 0.045±0.00 0.067±0.00 0.022±0.00 N/A 0.326±0.00 N/A N/A N/A
ENSDART00000133078 N/A N/A N/A 13.883±4.91 N/A N/A 0.246±0.00 0.046±0.00 N/A N/A 0.941±0.00 N/A N/A N/A
ENSDARG00000088117 ENSDART00000123851 N/A N/A N/A 2.925±1.75 N/A N/A 0.132±0.12 1.750±1.11 0.020±0.00 N/A 0.280±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000033170 ENST00000342677 1.260±0.00 2.157±0.00 0.757±0.00 7.677±3.86 8.432±6.44 2.902±1.18 1.020±0.31 1.074±0.57 3.772±3.56 3.501±0.99 0.183±0.00 5.127±2.52 7.706±4.56 7.040±2.27
ENST00000358307 N/A N/A N/A N/A N/A N/A N/A 0.804±0.00 0.073±0.00 N/A N/A N/A 1.424±0.00 N/A
ENST00000360689 N/A N/A N/A 2.492±0.00 N/A 0.274±0.00 0.169±0.00 N/A N/A N/A N/A 0.470±0.00 N/A 1.063±0.00
ENST00000394586 N/A N/A N/A N/A N/A 1.655±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000553924 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554610 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554667 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000554765 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557164 2.365±0.00 3.487±0.00 1.997±0.00 8.111±0.68 5.297±2.26 2.561±0.92 1.167±0.07 1.960±0.00 1.623±1.34 1.961±0.92 1.551±0.00 5.358±1.14 4.324±2.61 4.994±1.76
ENST00000557338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557536 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171723 ENST00000315266 N/A N/A 1.261±0.00 5.052±0.00 N/A N/A 0.602±0.00 4.436±0.00 0.652±0.00 N/A N/A N/A N/A N/A
ENST00000459628 N/A N/A 3.237±0.00 N/A N/A 1.178±0.00 1.341±0.00 N/A N/A 1.340±0.00 N/A 0.374±0.00 N/A N/A
ENST00000478722 2.234±0.00 N/A N/A N/A 2.298±0.00 1.718±0.00 2.357±0.00 3.148±0.00 1.894±0.00 1.875±0.00 2.930±2.36 1.675±1.09 1.222±0.27 1.738±0.86
ENST00000543237 N/A N/A N/A 4.968±0.92 1.712±0.34 N/A 0.489±0.00 N/A N/A N/A N/A 0.271±0.00 N/A N/A
ENST00000544752 0.658±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.810±0.00 N/A 0.269±0.00 0.787±0.13 1.483±0.00
ENST00000553936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.059±0.00 2.354±0.00 N/A
ENST00000555668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.481±0.00 N/A N/A N/A
ENST00000556501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.039±0.00 N/A N/A
ENST00000557654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.165±0.00
ENST00000557678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000180662 ENST00000465083 N/A 0.124±0.00 0.751±0.00 N/A 0.072±0.00 0.181±0.11 N/A 0.025±0.00 0.245±0.22 0.493±0.40 0.291±0.00 0.055±0.01 0.042±0.00 0.119±0.01
ENSG00000196553 ENST00000359454 N/A N/A N/A N/A 0.051±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 13.615±6.52
ENST00000389594 N/A 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.527±0.00
ENST00000411796 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.073±0.00
ENST00000432289 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436570 N/A N/A N/A N/A N/A 0.806±0.18 0.126±0.00 N/A 2.810±0.00 N/A N/A 0.076±0.00 N/A N/A
ENST00000450299 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.360±6.02
ENSG00000224861 ENST00000445822 0.451±0.00 0.299±0.00 0.382±0.00 0.093±0.00 0.157±0.00 0.171±0.14 0.082±0.00 0.131±0.05 0.090±0.05 0.066±0.00 0.389±0.35 0.269±0.31 0.070±0.04 0.358±0.24
ENSG00000258490 ENST00000555850 0.018±0.00 0.017±0.00 N/A 0.165±0.00 1.172±1.11 0.015±0.00 0.393±0.30 0.145±0.00 N/A 0.196±0.00 N/A N/A 0.064±0.00 0.015±0.00
ENSG00000258502 ENST00000554187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.356±0.00
ENST00000556291 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557050 N/A N/A N/A N/A N/A 0.282±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000557723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258629 ENST00000555712 0.009±0.00 N/A N/A N/A 0.009±0.00 N/A 0.008±0.00 0.009±0.00 0.008±0.00 0.009±0.00 N/A 0.016±0.00 N/A 0.016±0.00
ENSG00000258796 ENST00000556832 N/A N/A 1.399±0.00 0.021±0.00 0.598±0.00 0.019±0.00 0.610±0.00 0.696±0.00 1.862±0.00 1.361±0.00 N/A 1.672±0.00 N/A 0.105±0.00
ENSG00000258847 ENST00000554907 0.052±0.00 0.213±0.00 N/A 0.285±0.00 0.208±0.00 0.276±0.00 0.017±0.00 0.428±0.00 N/A 0.138±0.06 N/A 0.117±0.02 0.076±0.00 0.147±0.05
ENSG00000258960 ENST00000557194 0.051±0.00 0.053±0.00 N/A 0.108±0.00 0.160±0.00 0.050±0.00 0.069±0.00 0.238±0.00 N/A 0.073±0.00 0.088±0.00 N/A N/A 0.024±0.00
ENSG00000258980 ENST00000555940 N/A N/A N/A N/A 1.477±0.00 N/A N/A N/A N/A N/A N/A 0.025±0.00 N/A 0.023±0.00
ENSG00000277651 ENST00000616012 0.159±0.00 0.027±0.00 N/A N/A N/A N/A N/A 0.132±0.00 N/A 0.024±0.00 N/A N/A 0.100±0.00 0.153±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000021065 ENSMUST00000062804 1.797±0.54 19.243±3.25 N/A 0.968±0.25 3.307±1.74 8.955±2.20 1.865±0.63 5.700±2.18 0.774±0.32 6.138±1.34 N/A 6.113±2.11 2.506±0.67 5.453±0.91
ENSMUST00000171770 1.037±0.16 N/A 2.207±0.51 6.890±4.16 1.374±1.05 2.384±0.39 0.536±0.12 2.445±0.59 1.713±1.13 1.281±0.06 4.528±0.57 27.320±16.57 21.194±10.82 2.191±1.99
ENSMUST00000177595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000047454 ENSMUST00000052472 N/A N/A N/A 6.888±0.35 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110388 10.068±0.37 7.952±0.93 7.487±0.38 7.241±0.40 9.028±3.69 3.966±0.35 5.361±0.79 16.245±0.71 8.156±5.24 5.318±0.84 9.213±1.09 6.646±1.58 2.029±0.49 3.796±1.70
ENSMUSG00000064833 ENSMUST00000082899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.669±1.61 N/A
ENSMUSG00000099418 ENSMUST00000185497 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 N/A 75.733±0.00
ENSMUST00000187283 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188791 N/A N/A N/A N/A N/A N/A N/A N/A 0.016±0.00 N/A N/A 0.081±0.00 N/A N/A

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