C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00010J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000171723-ENSG00000172717 CGP 9606 14:66507407-67228550
GeneTranscriptPositionBiotype
ENSG00000171723 (GPHN)
gephyrin 		ENST00000315266 (GPHN-003) 66507407-67181798 protein_coding
ENST00000459628 (GPHN-004) 66508138-67059029 protein_coding
ENST00000478722 (GPHN-006) 66507407-67181803 protein_coding
ENST00000543237 (GPHN-007) 66508504-67181023 protein_coding
ENST00000544752 (GPHN-008) 66823095-67181093 processed_transcript
ENST00000553936 (GPHN-010) 66508516-66916034 nonsense_mediated_decay
ENST00000555456 (GPHN-014) 66824474-67058726 protein_coding
ENST00000555503 (GPHN-017) 67113070-67169136 protein_coding
ENST00000555527 (GPHN-016) 67111915-67168991 processed_transcript
ENST00000555668 (GPHN-011) 66508507-66880032 nonsense_mediated_decay
ENST00000556020 (GPHN-009) 66509059-66824554 processed_transcript
ENST00000556240 (GPHN-019) 67180849-67181792 protein_coding
ENST00000556501 (GPHN-015) 67058649-67110287 retained_intron
ENST00000556633 (GPHN-013) 66508507-66922758 nonsense_mediated_decay
ENST00000557654 (GPHN-012) 66508516-66880033 nonsense_mediated_decay
ENST00000557678 (GPHN-018) 67143001-67165230 retained_intron
ENSG00000172717 (FAM71D)
family with sequence similarity 71, member D 		ENST00000311864 (FAM71D-001) 67189429-67228550 nonsense_mediated_decay
ENST00000524532 (FAM71D-005) 67189393-67203130 protein_coding
ENST00000524914 (FAM71D-012) 67189443-67200560 nonsense_mediated_decay
ENST00000530728 (FAM71D-004) 67189440-67203167 protein_coding
ENST00000531566 (FAM71D-006) 67197289-67203287 processed_transcript
ENST00000534174 (FAM71D-003) 67189461-67228545 nonsense_mediated_decay
ENST00000554500 (FAM71D-010) 67227471-67228544 processed_transcript
ENST00000556046 (FAM71D-009) 67196774-67223940 nonsense_mediated_decay
ENST00000556117 (FAM71D-007) 67204948-67223940 protein_coding
ENST00000557671 (FAM71D-008) 67208317-67224828 protein_coding
ENST00000612183 (FAM71D-201) 67189393-67228550 protein_coding
ENSG00000258490 (RP11-862P13.1)
 ENST00000555850 (RP11-862P13.1-001) 66969038-66969816 antisense
ENSG00000258796 (CTD-2560C21.1)
 ENST00000556832 (CTD-2560C21.1-001) 66760532-66761018 processed_pseudogene
ENSG00000258988 (RP11-125H8.1)
 ENST00000553618 (RP11-125H8.1-001) 67199062-67200327 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_00010J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000047454-ENSMUSG00000056987 CGP 10090 12:78226655-78734513
GeneTranscriptPositionBiotype
ENSMUSG00000047454 (Gphn)
gephyrin 		ENSMUST00000052472 (Gphn-201) 78226655-78684767 protein_coding
ENSMUST00000110388 (Gphn-202) 78226655-78684767 protein_coding
ENSMUSG00000056987 (Fam71d)
family with sequence similarity 71, member D 		ENSMUST00000077968 (Fam71d-001) 78691535-78734513 protein_coding

Mus musculus Ensembl (GRCm38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00010J_0001ENSG00000171723ENST00000315266ENST00000459628ENST00000478722ENST00000543237ENST00000544752ENST00000555527ENST00000556240ENST00000556633ENST00000557654ENSG00000172717ENST00000311864ENST00000524532ENST00000524914ENST00000530728ENST00000534174ENST00000554500ENST00000556046ENST00000556117ENST00000557671ENSG00000258490ENST00000555850ENSG00000258796ENST00000556832ENSG00000258988ENST00000553618CIL_00010J_0002ENSMUSG00000047454ENSMUST00000052472ENSMUST00000110388ENSMUSG00000056987ENSMUST00000077968
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000171723 ENST00000315266 N/A N/A 1.261±0.00 5.052±0.00 N/A N/A 0.602±0.00 4.436±0.00 0.652±0.00 N/A N/A N/A N/A N/A
ENST00000459628 N/A N/A 3.237±0.00 N/A N/A 1.178±0.00 1.341±0.00 N/A N/A 1.340±0.00 N/A 0.374±0.00 N/A N/A
ENST00000478722 2.234±0.00 N/A N/A N/A 2.298±0.00 1.718±0.00 2.357±0.00 3.148±0.00 1.894±0.00 1.875±0.00 2.930±2.36 1.675±1.09 1.222±0.27 1.738±0.86
ENST00000543237 N/A N/A N/A 4.968±0.92 1.712±0.34 N/A 0.489±0.00 N/A N/A N/A N/A 0.271±0.00 N/A N/A
ENST00000544752 0.658±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.810±0.00 N/A 0.269±0.00 0.787±0.13 1.483±0.00
ENST00000553936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555456 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555503 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000555527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.059±0.00 2.354±0.00 N/A
ENST00000555668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556240 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.481±0.00 N/A N/A N/A
ENST00000556501 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000556633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 10.039±0.00 N/A N/A
ENST00000557654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.165±0.00
ENST00000557678 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000172717 ENST00000311864 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.796±0.00
ENST00000524532 0.148±0.00 N/A N/A 0.025±0.00 N/A N/A N/A 0.192±0.00 N/A N/A N/A N/A N/A N/A
ENST00000524914 N/A N/A N/A N/A N/A 0.011±0.00 N/A N/A 0.058±0.00 N/A N/A N/A 0.031±0.00 2.572±0.00
ENST00000530728 N/A N/A N/A 0.080±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000531566 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000534174 0.049±0.00 N/A N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A 7.352±0.00
ENST00000554500 N/A N/A N/A N/A 0.102±0.00 N/A 0.018±0.00 0.072±0.00 N/A N/A N/A N/A 0.106±0.00 N/A
ENST00000556046 N/A N/A N/A 0.019±0.00 N/A 0.050±0.00 N/A N/A N/A N/A N/A N/A N/A 5.544±0.00
ENST00000556117 N/A N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000557671 N/A N/A N/A 0.033±0.00 N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A
ENST00000612183 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000258490 ENST00000555850 0.018±0.00 0.017±0.00 N/A 0.165±0.00 1.172±1.11 0.015±0.00 0.393±0.30 0.145±0.00 N/A 0.196±0.00 N/A N/A 0.064±0.00 0.015±0.00
ENSG00000258796 ENST00000556832 N/A N/A 1.399±0.00 0.021±0.00 0.598±0.00 0.019±0.00 0.610±0.00 0.696±0.00 1.862±0.00 1.361±0.00 N/A 1.672±0.00 N/A 0.105±0.00
ENSG00000258988 ENST00000553618 N/A 0.015±0.00 0.220±0.00 N/A N/A N/A 0.028±0.00 0.093±0.00 N/A 0.057±0.00 0.026±0.00 0.017±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000047454 ENSMUST00000052472 N/A N/A N/A 6.888±0.35 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110388 10.068±0.37 7.952±0.93 7.487±0.38 7.241±0.40 9.028±3.69 3.966±0.35 5.361±0.79 16.245±0.71 8.156±5.24 5.318±0.84 9.213±1.09 6.646±1.58 2.029±0.49 3.796±1.70
ENSMUSG00000056987 ENSMUST00000077968 0.095±0.00 0.089±0.01 N/A 0.082±0.00 0.023±0.00 0.054±0.00 0.078±0.03 0.218±0.12 0.015±0.01 0.052±0.02 0.027±0.01 0.046±0.01 0.017±0.00 23.068±3.23

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