C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clathrin, light polypeptide (Lcb)
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047547 Cltb 10090 - 13:54592401-54611344 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000049575 Cltb-003 54593585-54611292 protein_coding
  ENSMUST00000091609 Cltb-001 54592401-54611344 protein_coding
  ENSMUST00000140142 Cltb-004 54593538-54599161 protein_coding
  ENSMUST00000146301 Cltb-002 54596040-54611292 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049575ENSMUST00000091609ENSMUST00000140142ENSMUST00000146301
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049575 15.412±5.55 23.626±3.57 20.458±3.31 60.135±51.70 22.283±3.32 52.709±6.83 16.566±6.11 32.239±5.41 11.566±5.70 34.478±2.31 27.668±4.58 11.349±2.85 37.637±21.18 4.363±2.26
ENSMUST00000091609 12.351±3.27 10.247±1.49 23.581±1.24 10.499±1.09 9.915±2.54 27.632±4.07 10.033±1.94 17.561±1.05 8.418±2.92 21.449±1.22 20.669±1.01 6.384±2.12 18.279±8.75 2.990±0.50
ENSMUST00000140142 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.377±4.64 N/A 9.185±0.00
ENSMUST00000146301 N/A N/A N/A 3.708±0.72 0.921±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002N8 CIL_0002N8_0002 CGP 13:54590207-54611344
CIL_0002N7 CIL_0002N7_0002 CGP 13:54592401-54664068

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005515 IEA protein binding
GO:0005802 IDA trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0008150 ND biological_process
GO:0016192 IEA vesicle-mediated transport
GO:0030118 ISS clathrin coat
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0042277 IEA peptide binding
GO:0060170 IDA ciliary membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052368 FP102272.1 Uncharacterized protein protein_coding Danio_rerio
ENSG00000175416 CLTB clathrin, light chain B protein_coding Homo_sapiens

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