C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: clathrin, light chain B
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000175416 CLTB 9606 - 5:176392455-176416569 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000310418 CLTB-001 176392455-176416569 protein_coding
  ENST00000345807 CLTB-002 176392455-176416569 protein_coding
  ENST00000502877 CLTB-005 176392793-176416538 protein_coding
  ENST00000507821 CLTB-007 176405590-176406340 processed_transcript
  ENST00000508425 CLTB-006 176392642-176416261 protein_coding
  ENST00000509319 CLTB-004 176406167-176407591 processed_transcript
  ENST00000510734 CLTB-003 176392649-176416539 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000310418ENST00000345807ENST00000502877ENST00000508425ENST00000510734
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000310418 N/A N/A N/A 49.450±25.66 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000345807 52.639±0.00 72.603±0.00 2.663±0.00 14.865±11.67 36.188±30.62 44.718±31.94 56.665±46.61 33.896±29.10 21.566±12.88 38.609±33.09 52.941±30.01 89.588±56.34 228.848±48.60 60.249±1.88
ENST00000502877 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.114±0.00 1.795±0.00 N/A N/A
ENST00000508425 31.218±0.00 37.379±0.00 N/A 43.255±0.00 39.034±0.00 47.879±0.00 N/A 26.690±0.00 12.362±0.00 34.338±0.00 47.792±0.00 N/A N/A 29.412±0.00
ENST00000510734 N/A N/A 0.642±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DL CIL_0002DL_0001 CGP 5:176346061-176401865
CIL_00098R CIL_00098R_0001 VISTA 5:176349731-176951529
CIL_0000P0 CIL_0000P0_0002 CGP 5:176365468-176401865
CIL_0002N8 CIL_0002N8_0001 CGP 5:176388747-176416569
CIL_0002N7 CIL_0002N7_0001 CGP 5:176392455-176510074

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0005198 IEA structural molecule activity
GO:0005515 IPI protein binding
GO:0005802 IEA trans-Golgi network
GO:0005886 IEA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0016192 IEA vesicle-mediated transport
GO:0030118 ISS clathrin coat
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0042277 IEA peptide binding
GO:0060170 IEA ciliary membrane

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000052368 FP102272.1 Uncharacterized protein protein_coding Danio_rerio
ENSMUSG00000047547 Cltb clathrin, light polypeptide (Lcb) protein_coding Mus_musculus

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