C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tripartite motif containing 16-like
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000108448 TRIM16L 9606 + 17:18697998-18736118 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000395671 TRIM16L-001 18722023-18736118 protein_coding
  ENST00000414850 TRIM16L-014 18722119-18735427 protein_coding
  ENST00000424146 TRIM16L-003 18722121-18734922 protein_coding
  ENST00000449552 TRIM16L-012 18698010-18736118 protein_coding
  ENST00000449697 TRIM16L-010 18698028-18704547 processed_transcript
  ENST00000571542 TRIM16L-007 18722118-18735087 protein_coding
  ENST00000571708 TRIM16L-011 18699215-18735490 protein_coding
  ENST00000571733 TRIM16L-008 18722123-18731219 processed_transcript
  ENST00000572555 TRIM16L-009 18697998-18735667 protein_coding
  ENST00000573443 TRIM16L-005 18721777-18731213 protein_coding
  ENST00000574042 TRIM16L-019 18727651-18736112 protein_coding
  ENST00000577969 TRIM16L-018 18722247-18732134 nonsense_mediated_decay
  ENST00000578086 TRIM16L-016 18701357-18704765 processed_transcript
  ENST00000581904 TRIM16L-015 18698008-18722245 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000395671ENST00000414850ENST00000449552ENST00000449697ENST00000571708ENST00000571733ENST00000572555ENST00000573443ENST00000574042ENST00000577969ENST00000581904
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000395671 0.780±0.00 0.469±0.00 0.046±0.00 0.652±0.00 3.431±0.00 1.196±0.00 0.399±0.01 2.745±0.00 0.976±0.00 0.387±0.00 1.832±0.00 0.649±0.28 0.722±0.13 0.957±0.20
ENST00000414850 N/A N/A N/A N/A N/A 1.344±0.00 0.874±0.00 N/A N/A 0.590±0.13 1.563±0.00 N/A N/A 1.488±0.00
ENST00000449552 N/A N/A N/A 0.240±0.00 N/A N/A N/A N/A N/A N/A N/A 0.111±0.00 N/A N/A
ENST00000449697 0.667±0.00 0.568±0.00 0.091±0.00 0.912±0.00 N/A N/A N/A 0.713±0.00 N/A 0.413±0.00 N/A 0.632±0.00 1.044±0.00 0.683±0.00
ENST00000571708 0.340±0.00 0.399±0.00 0.051±0.00 0.487±0.00 N/A 0.229±0.11 N/A 0.582±0.00 0.224±0.00 0.357±0.00 N/A 0.313±0.11 0.268±0.00 0.476±0.00
ENST00000571733 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.592±0.00 N/A N/A 0.641±0.00 N/A
ENST00000572555 N/A N/A N/A N/A 2.018±0.00 N/A 0.386±0.00 N/A N/A N/A 1.250±0.00 0.255±0.01 N/A N/A
ENST00000573443 N/A N/A N/A N/A N/A N/A 1.132±0.00 N/A N/A 1.594±0.00 N/A 1.013±0.00 N/A N/A
ENST00000574042 N/A N/A N/A N/A 0.816±0.00 N/A 0.565±0.01 N/A 0.532±0.00 N/A N/A N/A N/A N/A
ENST00000577969 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.182±0.00 N/A N/A
ENST00000581904 N/A N/A 0.422±0.00 1.342±0.00 0.823±0.00 N/A N/A N/A N/A N/A 2.007±0.00 0.892±0.20 0.792±0.00 1.763±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000DU CIL_0000DU_0001 CGP 17:18658429-18736118
CIL_0005CX CIL_0005CX_0001 CGP 17:18697998-18779349

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000010673 trim16 tripartite motif-containing 16 protein_coding Danio_rerio
ENSMUSG00000047821 Trim16 tripartite motif-containing 16 protein_coding Mus_musculus

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