C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: trinucleotide repeat containing 6b
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000047888 Tnrc6b 10090 + 15:80711319-80941086 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000067689 Tnrc6b-201 80711319-80941086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067689
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067689 3.057±1.36 4.367±1.64 1.708±0.51 5.674±3.05 5.067±2.08 4.322±0.67 2.215±0.94 3.252±1.19 2.774±1.51 4.207±1.60 2.400±1.05 5.715±2.12 1.210±0.59 2.167±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W3 CIL_0005W3_0002 CGP 15:80671847-80941086
CIL_0006F2 CIL_0006F2_0002 CGP 15:80711319-80970947

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006417 IEA regulation of translation
GO:0031047 IEA gene silencing by RNA
GO:0044822 IEA poly(A) RNA binding
GO:0060213 IEA positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IEA positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000074161 tnrc6b trinucleotide repeat containing 6b protein_coding Danio_rerio
ENSDARG00000076389 TNRC6B (2 of 3) trinucleotide repeat containing 6B protein_coding Danio_rerio
ENSDARG00000079723 TNRC6B (3 of 3) trinucleotide repeat containing 6B protein_coding Danio_rerio
ENSG00000100354 TNRC6B trinucleotide repeat containing 6B protein_coding Homo_sapiens

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