C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trinucleotide repeat containing 6b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067689 Tnrc6b-201 ENSMUSG00000047888 10090 + 15:80711319-80941086 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000067689
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000067689 3.057±1.36 4.367±1.64 1.708±0.51 5.674±3.05 5.067±2.08 4.322±0.67 2.215±0.94 3.252±1.19 2.774±1.51 4.207±1.60 2.400±1.05 5.715±2.12 1.210±0.59 2.167±1.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005W3 CIL_0005W3_0002 CGP 15:80671847-80941086
CIL_0006F2 CIL_0006F2_0002 CGP 15:80711319-80970947

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006417 IEA regulation of translation
GO:0031047 IEA gene silencing by RNA
GO:0044822 IEA poly(A) RNA binding
GO:0060213 IEA positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 IEA positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000153428 tnrc6b-001 protein_coding Danio_rerio 1e-22 115
ENSDART00000114402 tnrc6b-201 protein_coding Danio_rerio 2e-21 111
ENST00000301624 TNRC6C-201 protein_coding Homo_sapiens 2e-28 134
ENST00000301923 TNRC6B-201 protein_coding Homo_sapiens 0 4968
ENST00000335727 TNRC6B-002 protein_coding Homo_sapiens 0 4735
ENST00000335749 TNRC6C-202 protein_coding Homo_sapiens 2e-28 134
ENST00000402203 TNRC6B-001 protein_coding Homo_sapiens 0 3923
ENST00000441751 TNRC6B-004 protein_coding Homo_sapiens 0 385
ENST00000446273 TNRC6B-003 protein_coding Homo_sapiens 0 6270
ENST00000454349 TNRC6B-202 protein_coding Homo_sapiens 0 5304
ENST00000467658 TNRC6B-007 retained_intron Homo_sapiens 0 344
ENST00000497559 TNRC6B-006 processed_transcript Homo_sapiens 0 628
ENST00000588061 TNRC6C-002 protein_coding Homo_sapiens 2e-28 134
ENST00000588847 TNRC6C-001 protein_coding Homo_sapiens 2e-28 134

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