C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005W3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000133477-ENSG00000100354 CGP 9606 22:39994949-40335808
GeneTranscriptPositionBiotype
ENSG00000100354 (TNRC6B)
trinucleotide repeat containing 6B 		ENST00000301923 (TNRC6B-201) 40044817-40335807 protein_coding
ENST00000335727 (TNRC6B-002) 40177942-40335808 protein_coding
ENST00000402203 (TNRC6B-001) 40045474-40323360 protein_coding
ENST00000441751 (TNRC6B-004) 40044817-40156182 protein_coding
ENST00000446273 (TNRC6B-003) 40265003-40321799 protein_coding
ENST00000454349 (TNRC6B-202) 40177925-40335807 protein_coding
ENST00000467658 (TNRC6B-007) 40300856-40301495 retained_intron
ENST00000489500 (TNRC6B-005) 40177925-40246362 retained_intron
ENST00000497559 (TNRC6B-006) 40276840-40300498 processed_transcript
ENSG00000133477 (FAM83F)
family with sequence similarity 83, member F 		ENST00000333407 (FAM83F-002) 39994949-40043529 protein_coding
ENST00000473717 (FAM83F-001) 40009688-40030031 protein_coding
ENST00000488874 (FAM83F-003) 39995362-39999125 processed_transcript
ENSG00000228599 (RPL7P52)
ribosomal protein L7 pseudogene 52 		ENST00000449200 (RPL7P52-001) 40106325-40107066 processed_pseudogene
ENSG00000261202 (RP3-496C20.1)
 ENST00000569912 (RP3-496C20.1-001) 40043068-40044530 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0005W3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000022408-ENSMUSG00000047888 CGP 10090 15:80671847-80941086
GeneTranscriptPositionBiotype
ENSMUSG00000022408 (Fam83f)
family with sequence similarity 83, member F 		ENSMUST00000023044 (Fam83f-201) 80671847-80700420 protein_coding
ENSMUSG00000047888 (Tnrc6b)
trinucleotide repeat containing 6b 		ENSMUST00000067689 (Tnrc6b-201) 80711319-80941086 protein_coding

Mus musculus Ensembl (GRCm38)

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Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005W3_0001ENSG00000100354ENST00000301923ENST00000335727ENST00000402203ENST00000441751ENST00000446273ENST00000454349ENST00000467658ENST00000489500ENST00000497559ENSG00000133477ENST00000333407ENST00000473717ENST00000488874ENSG00000228599ENST00000449200ENSG00000261202ENST00000569912CIL_0005W3_0002ENSMUSG00000022408ENSMUST00000023044ENSMUSG00000047888ENSMUST00000067689
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005W3_0001ENSG00000100354ENST00000301923ENST00000335727ENST00000402203ENST00000446273ENST00000454349ENSG00000133477ENST00000333407ENST00000473717ENSG00000228599ENST00000449200ENSG00000261202ENST00000569912CIL_0005W3_0002ENSMUSG00000022408ENSMUST00000023044ENSMUSG00000047888ENSMUST00000067689
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000100354 ENST00000301923 0.623±0.00 N/A N/A 0.936±0.00 N/A N/A N/A N/A N/A N/A 0.352±0.00 0.376±0.00 N/A N/A
ENST00000335727 0.647±0.00 N/A N/A 0.803±0.18 N/A 1.258±0.47 1.487±0.60 1.979±0.00 2.599±0.00 0.613±0.00 0.887±0.27 1.090±0.59 0.772±0.78 2.871±0.96
ENST00000402203 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.408±0.03 8.381±0.00
ENST00000441751 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000446273 N/A N/A N/A N/A 2.315±0.00 N/A N/A N/A 3.083±0.00 N/A N/A N/A N/A 3.179±0.00
ENST00000454349 N/A N/A N/A 1.018±0.06 N/A N/A 0.703±0.20 N/A N/A N/A N/A 0.634±0.20 N/A N/A
ENST00000467658 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000133477 ENST00000333407 0.246±0.00 0.181±0.00 0.676±0.00 0.046±0.02 0.748±0.20 0.546±0.36 0.214±0.17 0.660±0.54 0.095±0.02 0.103±0.00 0.032±0.00 0.697±0.38 0.010±0.00 0.735±0.10
ENST00000473717 0.407±0.00 N/A N/A N/A N/A 0.822±0.00 N/A N/A 0.660±0.00 0.309±0.00 N/A 7.568±6.28 0.159±0.03 20.348±9.06
ENST00000488874 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000228599 ENST00000449200 0.150±0.00 0.346±0.00 N/A 0.052±0.00 0.118±0.00 N/A 0.335±0.32 0.190±0.00 N/A 0.049±0.00 N/A 0.085±0.00 N/A 0.123±0.00
ENSG00000261202 ENST00000569912 N/A N/A N/A 0.087±0.00 N/A N/A N/A N/A 0.334±0.00 N/A N/A N/A N/A 5.216±2.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000022408 ENSMUST00000023044 0.674±0.15 0.042±0.02 9.236±0.64 0.137±0.03 2.455±1.10 12.569±1.16 0.069±0.03 1.339±0.16 0.795±0.57 0.741±0.28 0.080±0.06 1.112±0.36 3.892±1.68 0.433±0.24
ENSMUSG00000047888 ENSMUST00000067689 3.057±1.36 4.367±1.64 1.708±0.51 5.674±3.05 5.067±2.08 4.322±0.67 2.215±0.94 3.252±1.19 2.774±1.51 4.207±1.60 2.400±1.05 5.715±2.12 1.210±0.59 2.167±1.01

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