C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA-yW synthesizing protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000048495 Tyw5 10090 - 1:57388237-57407101 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000079998 Tyw5-004 57388240-57406674 nonsense_mediated_decay
  ENSMUST00000097732 Tyw5-002 57388240-57406471 retained_intron
  ENSMUST00000160118 Tyw5-006 57391429-57406471 nonsense_mediated_decay
  ENSMUST00000160837 Tyw5-007 57388666-57406443 protein_coding
  ENSMUST00000161092 Tyw5-008 57388686-57391740 retained_intron
  ENSMUST00000161727 Tyw5-010 57388416-57393698 retained_intron
  ENSMUST00000161780 Tyw5-003 57393321-57406537 protein_coding
  ENSMUST00000162663 Tyw5-011 57388405-57390771 processed_transcript
  ENSMUST00000162686 Tyw5-001 57388237-57407101 protein_coding
  ENSMUST00000163039 Tyw5-009 57390712-57401522 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastLiverMuscleOvaryPlacentaTestisENSMUST00000079998ENSMUST00000097732ENSMUST00000162663
Transcript ID Bladder Brain Breast Liver Muscle Ovary Placenta Testis
ENSMUST00000079998 N/A N/A N/A 3.378±0.31 1.444±0.00 3.156±0.15 6.093±1.00 N/A
ENSMUST00000097732 5.383±1.66 2.948±0.23 N/A N/A N/A 1.807±0.04 2.969±0.00 N/A
ENSMUST00000162663 N/A 24.077±0.00 9.010±0.00 5.885±0.46 N/A 26.167±0.00 45.003±4.59 6.323±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K2 CIL_0002K2_0002 CGP 1:57377620-57407101
CIL_0000JI CIL_0000JI_0003 CGP 1:57388237-57417953

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 ISS tRNA binding
GO:0005506 ISS iron ion binding
GO:0005575 ND cellular_component
GO:0016706 ISS oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031591 ISS wybutosine biosynthetic process
GO:0042803 ISS protein homodimerization activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069672 tyw5 tRNA-yW synthesizing protein 5 protein_coding Danio_rerio
ENSG00000162971 TYW5 tRNA-yW synthesizing protein 5 protein_coding Homo_sapiens

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