C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: tRNA-yW synthesizing protein 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSG00000162971 TYW5 9606 - 2:199929975-199955736 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENST00000354611 TYW5-001 199929975-199955736 protein_coding
  ENST00000441832 TYW5-003 199931899-199955503 nonsense_mediated_decay
  ENST00000452512 TYW5-002 199931333-199955500 processed_transcript
  ENST00000483328 TYW5-005 199929975-199955736 nonsense_mediated_decay
  ENST00000493181 TYW5-004 199942058-199955502 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000354611ENST00000441832ENST00000483328ENST00000493181
Transcript ID Adrenal Bladder Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000354611 N/A N/A N/A N/A N/A 1.018±0.00 N/A N/A 0.804±0.04 0.375±0.00 N/A
ENST00000441832 N/A N/A N/A 1.750±0.00 N/A N/A N/A 1.672±0.00 2.705±0.83 0.833±0.00 2.159±0.00
ENST00000483328 N/A N/A 0.768±0.00 N/A N/A N/A 0.836±0.00 0.784±0.00 0.848±0.00 N/A N/A
ENST00000493181 0.751±0.00 0.457±0.00 0.694±0.00 0.846±0.00 0.273±0.00 N/A 0.445±0.00 0.893±0.00 0.567±0.00 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K2 CIL_0002K2_0001 CGP 2:199911256-199955935
CIL_0000JI CIL_0000JI_0002 CGP 2:199929975-200008540

Gene Ontology
GO IDEvidence TypeGO Description
GO:0000049 IDA tRNA binding
GO:0005506 IDA iron ion binding
GO:0016706 IDA oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031591 IDA wybutosine biosynthetic process
GO:0042803 IDA protein homodimerization activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069672 tyw5 tRNA-yW synthesizing protein 5 protein_coding Danio_rerio
ENSMUSG00000048495 Tyw5 tRNA-yW synthesizing protein 5 protein_coding Mus_musculus

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