C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA-yW synthesizing protein 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079998 Tyw5-004 ENSMUSG00000048495 10090 - 1:57388240-57406674 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; LiverMuscleOvaryPlacentaENSMUST00000079998
Transcript ID Liver Muscle Ovary Placenta
ENSMUST00000079998 3.378±0.31 1.444±0.00 3.156±0.15 6.093±1.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002K2 CIL_0002K2_0002 CGP 1:57377620-57407101
CIL_0000JI CIL_0000JI_0003 CGP 1:57388237-57417953

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000049 ISS tRNA binding
GO:0005506 ISS iron ion binding
GO:0005575 ND cellular_component
GO:0016706 ISS oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0031591 ISS wybutosine biosynthetic process
GO:0042803 ISS protein homodimerization activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354611 TYW5-001 protein_coding Homo_sapiens 0 972
ENST00000441832 TYW5-003 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000452512 TYW5-002 processed_transcript Homo_sapiens 0 824
ENST00000483328 TYW5-005 nonsense_mediated_decay Homo_sapiens 0 1059
ENST00000493181 TYW5-004 retained_intron Homo_sapiens 0 235

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